Wall clock time and date at job start Mon Mar 30 2020 00:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39845 * 119.97983 * 103.43775 * 3 2 1 5 5 C 1.37611 * 120.14632 * 180.02562 * 4 3 2 6 6 C 1.39512 * 120.11200 * 359.97438 * 5 4 3 7 7 C 1.48087 * 120.02181 * 179.97438 * 6 5 4 8 8 C 1.40006 * 119.61528 * 310.97360 * 7 6 5 9 9 C 1.38666 * 119.45233 * 180.27270 * 8 7 6 10 10 C 1.38313 * 118.70067 * 359.46002 * 9 8 7 11 11 C 1.40700 * 119.20217 * 0.56036 * 10 9 8 12 12 C 1.41368 * 119.75745 * 179.67468 * 11 10 9 13 13 H 1.08001 * 120.00045 * 349.20255 * 12 11 10 14 14 C 1.40016 * 119.99874 * 169.19256 * 12 11 10 15 15 N 1.30748 * 119.99610 * 166.41335 * 14 12 11 16 16 Si 1.86799 * 119.99849 * 346.41736 * 14 12 11 17 17 H 1.48494 * 109.47253 * 85.02825 * 16 14 12 18 18 H 1.48499 * 109.46862 * 205.03009 * 16 14 12 19 19 H 1.48498 * 109.47188 * 325.02897 * 16 14 12 20 20 N 1.32306 * 119.61263 * 130.99509 * 7 6 5 21 21 C 1.40169 * 119.96265 * 0.23239 * 6 5 4 22 22 N 1.39354 * 120.07911 * 179.75081 * 21 6 5 23 23 C 1.38536 * 119.84642 * 359.51156 * 21 6 5 24 24 H 1.07992 * 119.92352 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.94553 * 179.97438 * 5 4 3 26 26 H 1.07993 * 120.27432 * 0.02562 * 8 7 6 27 27 H 1.07997 * 120.64445 * 179.72507 * 9 8 7 28 28 H 1.07996 * 120.39690 * 180.23561 * 10 9 8 29 29 H 0.97001 * 119.99466 * 180.02562 * 15 14 12 30 30 H 0.97007 * 119.99561 * 2.77164 * 22 21 6 31 31 H 0.96996 * 120.00587 * 182.78181 * 22 21 6 32 32 H 1.08009 * 120.04985 * 180.25131 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2667 0.2825 -1.1782 5 6 4.6428 0.2835 -1.1822 6 6 5.3463 0.0038 -0.0104 7 6 6.8272 0.0049 -0.0171 8 6 7.5151 -0.7034 -1.0097 9 6 8.9017 -0.7047 -1.0095 10 6 9.5665 0.0081 -0.0281 11 6 8.8194 0.7000 0.9429 12 6 9.4868 1.4266 1.9553 13 1 10.5522 1.3112 2.0899 14 6 8.7667 2.2961 2.7835 15 7 9.3141 2.7617 3.8758 16 14 7.0239 2.7906 2.3279 17 1 6.0727 1.7625 2.8210 18 1 6.7028 4.1006 2.9491 19 1 6.9109 2.9019 0.8514 20 7 7.4847 0.6749 0.9153 21 6 4.6507 -0.2835 1.1721 22 7 5.3510 -0.5683 2.3428 23 6 3.2654 -0.2789 1.1756 24 1 2.7250 0.4997 -2.0868 25 1 5.1791 0.5012 -2.0940 26 1 6.9703 -1.2475 -1.7670 27 1 9.4518 -1.2482 -1.7634 28 1 10.6460 0.0289 -0.0043 29 1 8.8151 3.3638 4.4497 30 1 6.3203 -0.5285 2.3500 31 1 4.8695 -0.8065 3.1504 32 1 2.7261 -0.4959 2.0859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244081443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:15 Heat of formation + Delta-G solvation = 56.674424 kcal Electronic energy + Delta-G solvation = -18677.198855 eV Core-core repulsion = 15794.032817 eV Total energy + Delta-G solvation = -2883.166037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06419 -39.74918 -37.64404 -35.63547 -35.40554 -33.54066 -32.89364 -31.06889 -29.58439 -27.58303 -25.54136 -23.69020 -22.82094 -22.33288 -19.86345 -19.54077 -17.94367 -17.84496 -16.66321 -16.48359 -16.41773 -16.10662 -15.37936 -15.07981 -14.81789 -14.66311 -14.51170 -14.46941 -13.96234 -13.80998 -13.69291 -13.34857 -13.02855 -12.67263 -12.56814 -12.22887 -12.02321 -11.94501 -11.57683 -11.12739 -10.40391 -10.10746 -9.61538 -9.41693 -8.88300 -8.36974 -6.66540 -0.32460 0.66888 0.72713 0.88636 1.54293 1.61188 1.64533 1.71690 2.01209 2.44665 2.63245 2.77260 2.99309 3.19144 3.60841 3.65047 3.97347 4.25124 4.35439 4.48516 4.57867 4.68218 4.79486 4.83303 4.95192 4.99112 5.18557 5.35883 5.41568 5.50337 5.60185 5.76394 5.83368 6.01909 6.16052 6.43494 6.57866 6.62150 6.66667 6.98480 7.66917 8.09772 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.006986 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.255950 B = 4007.225171 C = 4859.227519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C 0.014 3.986 4 C -0.123 4.123 5 C -0.052 4.052 6 C -0.108 4.108 7 C 0.189 3.811 8 C -0.273 4.273 9 C -0.040 4.040 10 C -0.274 4.274 11 C 0.238 3.762 12 C -0.453 4.453 13 H 0.070 0.930 14 C 0.058 3.942 15 N -0.835 5.835 16 Si 1.036 2.964 17 H -0.239 1.239 18 H -0.341 1.341 19 H -0.289 1.289 20 N -0.573 5.573 21 C 0.234 3.766 22 N -0.862 5.862 23 C -0.156 4.156 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.111 0.889 29 H 0.294 0.706 30 H 0.403 0.597 31 H 0.405 0.595 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -6.164 -7.253 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.028 4.028 3 C 0.010 3.990 4 C -0.145 4.145 5 C -0.071 4.071 6 C -0.115 4.115 7 C 0.050 3.950 8 C -0.295 4.295 9 C -0.064 4.064 10 C -0.296 4.296 11 C 0.113 3.887 12 C -0.485 4.485 13 H 0.088 0.912 14 C -0.161 4.161 15 N -0.461 5.461 16 Si 0.870 3.130 17 H -0.164 1.164 18 H -0.276 1.276 19 H -0.217 1.217 20 N -0.292 5.292 21 C 0.125 3.875 22 N -0.400 5.400 23 C -0.181 4.181 24 H 0.175 0.825 25 H 0.168 0.832 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.235 0.765 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.618 -5.630 -6.360 13.598 hybrid contribution 1.247 0.018 0.111 1.252 sum -9.372 -5.612 -6.250 12.585 Atomic orbital electron populations 1.81244 1.13020 1.10397 1.09027 1.25741 0.92509 0.92296 0.92215 1.15732 0.83201 1.04732 0.95347 1.20961 0.93215 1.02999 0.97364 1.21040 0.93570 0.95752 0.96733 1.18608 0.90418 1.08311 0.94134 1.19796 0.92291 0.91975 0.90929 1.21630 0.94426 1.09723 1.03732 1.21368 0.94402 0.94528 0.96079 1.21868 0.99785 1.07880 1.00048 1.18585 0.87856 0.90907 0.91370 1.19474 0.96316 1.21040 1.11654 0.91214 1.26875 1.04495 0.92696 0.92007 1.69672 1.41134 1.25064 1.10181 0.84030 0.77434 0.73963 0.77574 1.16356 1.27550 1.21695 1.66714 1.08969 1.25542 1.28018 1.17655 0.90848 0.92313 0.86727 1.42800 1.10319 1.76750 1.10159 1.20532 0.91013 1.07906 0.98668 0.82463 0.83224 0.84095 0.83768 0.87105 0.89596 0.76589 0.76541 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.77 18.54 19.00 0.35 -12.42 16 2 C 0.29 6.84 15.32 88.33 1.35 8.20 16 3 C 0.01 0.32 5.73 -21.33 -0.12 0.20 16 4 C -0.12 -2.51 9.73 22.51 0.22 -2.30 16 5 C -0.05 -1.26 9.43 22.43 0.21 -1.05 16 6 C -0.11 -3.40 5.62 -19.89 -0.11 -3.51 16 7 C 0.19 7.12 5.78 42.12 0.24 7.36 16 8 C -0.27 -9.11 9.52 22.80 0.22 -8.89 16 9 C -0.04 -1.37 10.15 22.39 0.23 -1.15 16 10 C -0.27 -11.48 9.83 22.89 0.23 -11.25 16 11 C 0.24 11.39 6.25 40.26 0.25 11.64 16 12 C -0.45 -24.16 9.67 23.47 0.23 -23.93 16 13 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 14 C 0.06 3.04 5.52 85.29 0.47 3.51 16 15 N -0.84 -44.61 13.92 21.83 0.30 -44.31 16 16 Si 1.04 47.78 25.39 68.60 1.74 49.52 16 17 H -0.24 -10.13 5.93 99.48 0.59 -9.54 16 18 H -0.34 -15.86 7.11 99.48 0.71 -15.15 16 19 H -0.29 -14.18 6.73 99.48 0.67 -13.51 16 20 N -0.57 -25.37 3.26 -178.27 -0.58 -25.95 16 21 C 0.23 6.88 6.73 38.49 0.26 7.14 16 22 N -0.86 -26.00 7.85 -51.02 -0.40 -26.40 16 23 C -0.16 -3.73 9.58 22.65 0.22 -3.51 16 24 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 25 H 0.15 3.11 8.00 -2.91 -0.02 3.09 16 26 H 0.14 3.75 8.01 -2.91 -0.02 3.72 16 27 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 28 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.29 14.37 8.29 -92.71 -0.77 13.60 16 30 H 0.40 14.49 6.40 -92.70 -0.59 13.90 16 31 H 0.40 9.63 8.84 -92.71 -0.82 8.81 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -59.84 287.40 4.92 -54.92 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.38 Total: 22.20 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 3.89 Total: -17.55 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -0.33 Total: -109.08 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.74 Total: 49.52 kcal Total: -59.84 4.92 -54.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244081443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.592 kcal (2) G-P(sol) polarization free energy of solvation -59.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds