Wall clock time and date at job start Mon Mar 30 2020 00:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39962 * 119.95281 * 48.77045 * 3 2 1 5 5 C 1.36467 * 120.31064 * 179.70045 * 4 3 2 6 6 C 1.39832 * 120.21086 * 0.27202 * 5 4 3 7 7 C 1.47493 * 120.05042 * 179.97438 * 6 5 4 8 8 C 1.39520 * 120.80022 * 65.00550 * 7 6 5 9 9 N 1.31597 * 120.63710 * 179.97438 * 8 7 6 10 10 C 1.32272 * 122.52765 * 359.97438 * 9 8 7 11 11 C 1.36415 * 121.55634 * 359.97438 * 10 9 8 12 12 C 1.41162 * 119.12246 * 359.77226 * 11 10 9 13 13 C 1.40798 * 121.12384 * 180.25645 * 12 11 10 14 14 H 1.07997 * 120.00019 * 204.72827 * 13 12 11 15 15 C 1.40201 * 119.99507 * 24.72655 * 13 12 11 16 16 N 1.30668 * 119.99934 * 13.86588 * 15 13 12 17 17 Si 1.86800 * 119.99687 * 193.86371 * 15 13 12 18 18 H 1.48497 * 109.47226 * 94.97417 * 17 15 13 19 19 H 1.48501 * 109.47153 * 214.97775 * 17 15 13 20 20 H 1.48503 * 109.46918 * 334.97283 * 17 15 13 21 21 C 1.40565 * 119.89912 * 359.97438 * 6 5 4 22 22 N 1.39257 * 120.15297 * 180.02562 * 21 6 5 23 23 C 1.38478 * 119.69159 * 0.02562 * 21 6 5 24 24 H 1.08001 * 119.84872 * 359.96795 * 4 3 2 25 25 H 1.07996 * 119.89354 * 180.29455 * 5 4 3 26 26 H 1.08001 * 119.68443 * 359.96823 * 8 7 6 27 27 H 1.08005 * 119.22098 * 179.97438 * 10 9 8 28 28 H 1.07996 * 120.44143 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00034 * 180.02562 * 16 15 13 30 30 H 0.96995 * 120.00270 * 0.02562 * 22 21 6 31 31 H 0.96999 * 119.99774 * 179.97438 * 22 21 6 32 32 H 1.08011 * 120.10325 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -0.7983 -0.9120 5 6 4.6318 -0.7987 -0.9225 6 6 5.3426 -0.0044 -0.0174 7 6 6.8175 -0.0079 -0.0315 8 6 7.5226 0.4756 -1.1340 9 7 8.8385 0.4714 -1.1430 10 6 9.5552 0.0182 -0.1278 11 6 8.9650 -0.4754 0.9987 12 6 7.5561 -0.4978 1.0827 13 6 6.9030 -0.9931 2.2275 14 1 5.8963 -1.3766 2.1515 15 6 7.5597 -0.9882 3.4662 16 7 8.6530 -0.2900 3.6233 17 14 6.8717 -1.9799 4.8919 18 1 7.5404 -3.3048 4.9416 19 1 7.1166 -1.2537 6.1638 20 1 5.4109 -2.1695 4.7036 21 6 4.6494 0.7975 0.9058 22 7 5.3520 1.5910 1.8092 23 6 3.2647 0.7947 0.9128 24 1 2.7242 -1.4141 -1.6137 25 1 5.1645 -1.4141 -1.6323 26 1 6.9833 0.8569 -1.9885 27 1 10.6331 0.0396 -0.1922 28 1 9.5677 -0.8404 1.8171 29 1 9.1076 -0.2870 4.4802 30 1 6.3219 1.5915 1.8020 31 1 4.8713 2.1437 2.4450 32 1 2.7253 1.4080 1.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244090981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:19 Heat of formation + Delta-G solvation = 70.374111 kcal Electronic energy + Delta-G solvation = -18757.497252 eV Core-core repulsion = 15874.925278 eV Total energy + Delta-G solvation = -2882.571974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.43178 -38.02838 -36.24961 -34.43827 -33.83861 -32.08988 -30.39404 -29.08230 -27.95123 -26.11958 -23.71063 -21.92914 -21.44655 -20.57288 -18.42797 -17.72958 -16.38096 -15.87096 -15.49411 -14.98746 -14.62286 -14.44895 -13.91050 -13.67166 -13.33082 -13.23761 -12.80046 -12.55450 -12.43789 -12.25482 -12.15518 -11.67523 -11.54330 -11.34328 -11.03100 -10.85250 -10.40834 -10.12958 -9.92342 -9.63131 -8.56420 -8.15864 -8.00930 -7.72465 -7.09324 -6.77534 -4.78494 1.21374 2.09731 2.51009 2.67924 2.91726 2.92125 2.95983 3.11354 3.39641 3.70602 4.18788 4.41159 4.47994 4.64556 5.28477 5.44370 5.55379 5.64165 5.77251 5.92682 6.15653 6.30017 6.31000 6.63339 6.70708 6.74725 6.81391 6.94445 7.06271 7.19865 7.26310 7.37191 7.69151 7.74925 7.92686 8.11890 8.29793 8.45196 8.52956 8.57511 9.50306 9.82577 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.007840 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.157881 B = 3570.423477 C = 4820.572449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.272 3.728 3 C -0.014 4.014 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.021 4.021 7 C -0.240 4.240 8 C 0.132 3.868 9 N -0.578 5.578 10 C 0.081 3.919 11 C -0.209 4.209 12 C 0.140 3.860 13 C -0.430 4.430 14 H 0.085 0.915 15 C 0.079 3.921 16 N -0.779 5.779 17 Si 0.908 3.092 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.236 3.764 22 N -0.854 5.854 23 C -0.163 4.163 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.285 0.715 30 H 0.412 0.588 31 H 0.388 0.612 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 0.585 -0.360 2.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.042 4.042 3 C -0.018 4.018 4 C -0.154 4.154 5 C -0.100 4.100 6 C -0.027 4.027 7 C -0.246 4.246 8 C -0.027 4.027 9 N -0.292 5.292 10 C -0.067 4.067 11 C -0.231 4.231 12 C 0.132 3.868 13 C -0.460 4.460 14 H 0.103 0.897 15 C -0.142 4.142 16 N -0.403 5.403 17 Si 0.732 3.268 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.182 1.182 21 C 0.128 3.872 22 N -0.390 5.390 23 C -0.189 4.189 24 H 0.136 0.864 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.244 0.756 31 H 0.215 0.785 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.938 0.974 -0.901 4.155 hybrid contribution -0.010 -0.591 1.885 1.975 sum -3.948 0.384 0.984 4.086 Atomic orbital electron populations 1.81169 1.12386 1.09656 1.09397 1.25973 0.92897 0.92680 0.92671 1.15644 0.83266 1.02391 1.00514 1.20384 0.94229 1.00952 0.99840 1.20719 0.92778 0.97935 0.98586 1.18400 0.92796 0.96358 0.95165 1.19392 0.90634 1.14826 0.99763 1.22158 0.90001 0.95271 0.95230 1.67324 1.07523 1.24465 1.29901 1.21736 0.98146 0.96474 0.90330 1.21987 0.95698 1.06340 0.99053 1.17764 0.91354 0.86940 0.90730 1.19558 1.01182 1.33930 0.91301 0.89684 1.26016 0.93975 0.93482 1.00748 1.69712 1.14842 1.29558 1.26196 0.86262 0.80882 0.80296 0.79346 1.19124 1.20103 1.18162 1.17633 0.89685 0.90225 0.89635 1.42448 1.10262 1.48323 1.38001 1.20305 0.92169 1.04273 1.02142 0.86387 0.85741 0.86054 0.86552 0.85381 0.90340 0.75559 0.78510 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.56 18.54 41.84 0.78 -6.78 16 2 C 0.27 4.18 15.31 -22.47 -0.34 3.83 16 3 C -0.01 -0.21 5.74 -106.81 -0.61 -0.82 16 4 C -0.13 -1.89 9.68 -39.57 -0.38 -2.27 16 5 C -0.08 -1.29 9.67 -39.62 -0.38 -1.67 16 6 C -0.02 -0.38 4.51 -104.65 -0.47 -0.85 16 7 C -0.24 -4.95 4.57 -104.06 -0.48 -5.42 16 8 C 0.13 2.74 10.92 -17.17 -0.19 2.55 16 9 N -0.58 -12.81 10.31 -13.33 -0.14 -12.94 16 10 C 0.08 1.76 11.08 -18.02 -0.20 1.56 16 11 C -0.21 -4.76 8.73 -39.13 -0.34 -5.10 16 12 C 0.14 3.15 4.74 -106.23 -0.50 2.64 16 13 C -0.43 -9.53 7.21 -37.88 -0.27 -9.80 16 14 H 0.09 1.92 7.18 -52.49 -0.38 1.55 16 15 C 0.08 1.68 5.25 -17.31 -0.09 1.59 16 16 N -0.78 -17.03 10.80 55.56 0.60 -16.43 16 17 Si 0.91 16.71 29.58 -169.99 -5.03 11.68 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 21 C 0.24 3.98 6.12 -83.52 -0.51 3.47 16 22 N -0.85 -13.82 8.37 32.57 0.27 -13.55 16 23 C -0.16 -2.45 9.59 -38.98 -0.37 -2.82 16 24 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 25 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 28 H 0.13 3.00 6.14 -52.49 -0.32 2.68 16 29 H 0.29 5.74 8.29 -40.82 -0.34 5.41 16 30 H 0.41 7.69 6.59 -40.82 -0.27 7.42 16 31 H 0.39 5.15 8.84 -40.82 -0.36 4.78 16 32 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -24.39 289.39 -6.89 -31.28 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -2.58 Total: 15.51 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -5.15 Total: -13.12 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 1.51 Total: -49.71 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -24.39 -6.89 -31.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244090981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.652 kcal (2) G-P(sol) polarization free energy of solvation -24.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds