Wall clock time and date at job start Mon Mar 30 2020 00:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39962 * 119.95281 * 48.77045 * 3 2 1 5 5 C 1.36467 * 120.31064 * 179.70045 * 4 3 2 6 6 C 1.39832 * 120.21086 * 0.27202 * 5 4 3 7 7 C 1.47493 * 120.05042 * 179.97438 * 6 5 4 8 8 C 1.39520 * 120.80022 * 65.00550 * 7 6 5 9 9 N 1.31597 * 120.63710 * 179.97438 * 8 7 6 10 10 C 1.32272 * 122.52765 * 359.97438 * 9 8 7 11 11 C 1.36415 * 121.55634 * 359.97438 * 10 9 8 12 12 C 1.41162 * 119.12246 * 359.77226 * 11 10 9 13 13 C 1.40798 * 121.12384 * 180.25645 * 12 11 10 14 14 H 1.07997 * 120.00019 * 204.72827 * 13 12 11 15 15 C 1.40201 * 119.99507 * 24.72655 * 13 12 11 16 16 N 1.30668 * 119.99934 * 13.86588 * 15 13 12 17 17 Si 1.86800 * 119.99687 * 193.86371 * 15 13 12 18 18 H 1.48497 * 109.47226 * 94.97417 * 17 15 13 19 19 H 1.48501 * 109.47153 * 214.97775 * 17 15 13 20 20 H 1.48503 * 109.46918 * 334.97283 * 17 15 13 21 21 C 1.40565 * 119.89912 * 359.97438 * 6 5 4 22 22 N 1.39257 * 120.15297 * 180.02562 * 21 6 5 23 23 C 1.38478 * 119.69159 * 0.02562 * 21 6 5 24 24 H 1.08001 * 119.84872 * 359.96795 * 4 3 2 25 25 H 1.07996 * 119.89354 * 180.29455 * 5 4 3 26 26 H 1.08001 * 119.68443 * 359.96823 * 8 7 6 27 27 H 1.08005 * 119.22098 * 179.97438 * 10 9 8 28 28 H 1.07996 * 120.44143 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00034 * 180.02562 * 16 15 13 30 30 H 0.96995 * 120.00270 * 0.02562 * 22 21 6 31 31 H 0.96999 * 119.99774 * 179.97438 * 22 21 6 32 32 H 1.08011 * 120.10325 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -0.7983 -0.9120 5 6 4.6318 -0.7987 -0.9225 6 6 5.3426 -0.0044 -0.0174 7 6 6.8175 -0.0079 -0.0315 8 6 7.5226 0.4756 -1.1340 9 7 8.8385 0.4714 -1.1430 10 6 9.5552 0.0182 -0.1278 11 6 8.9650 -0.4754 0.9987 12 6 7.5561 -0.4978 1.0827 13 6 6.9030 -0.9931 2.2275 14 1 5.8963 -1.3766 2.1515 15 6 7.5597 -0.9882 3.4662 16 7 8.6530 -0.2900 3.6233 17 14 6.8717 -1.9799 4.8919 18 1 7.5404 -3.3048 4.9416 19 1 7.1166 -1.2537 6.1638 20 1 5.4109 -2.1695 4.7036 21 6 4.6494 0.7975 0.9058 22 7 5.3520 1.5910 1.8092 23 6 3.2647 0.7947 0.9128 24 1 2.7242 -1.4141 -1.6137 25 1 5.1645 -1.4141 -1.6323 26 1 6.9833 0.8569 -1.9885 27 1 10.6331 0.0396 -0.1922 28 1 9.5677 -0.8404 1.8171 29 1 9.1076 -0.2870 4.4802 30 1 6.3219 1.5915 1.8020 31 1 4.8713 2.1437 2.4450 32 1 2.7253 1.4080 1.6196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244090981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:19 Heat of formation + Delta-G solvation = 58.425012 kcal Electronic energy + Delta-G solvation = -18758.015404 eV Core-core repulsion = 15874.925278 eV Total energy + Delta-G solvation = -2883.090126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82464 -39.52997 -37.54247 -36.03608 -35.13860 -33.53614 -32.02269 -30.49574 -29.28448 -27.75419 -25.12122 -23.42553 -22.85637 -22.08030 -19.66789 -19.38398 -17.66496 -17.44907 -16.92894 -16.29921 -16.19268 -16.01096 -15.17422 -14.93768 -14.71268 -14.53295 -14.34324 -14.08081 -13.92376 -13.59571 -13.53534 -13.17823 -13.04874 -12.81636 -12.55690 -12.07877 -11.93015 -11.54473 -11.39165 -11.20681 -10.01672 -9.84144 -9.57956 -9.26819 -8.67638 -8.10045 -6.46471 -0.06044 0.87996 0.91414 1.05796 1.42180 1.51180 1.57642 1.68575 2.13204 2.18181 2.82582 2.93246 3.16717 3.40283 3.75847 4.08756 4.16766 4.31959 4.43960 4.59002 4.70081 4.95117 5.05382 5.09662 5.12428 5.30884 5.37224 5.53904 5.57781 5.64679 5.82791 5.96266 6.06698 6.26177 6.51837 6.60044 6.82824 6.87186 6.89529 7.20654 7.82687 8.23382 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.007840 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.157881 B = 3570.423477 C = 4820.572449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.290 3.710 3 C -0.009 4.009 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.051 4.051 7 C -0.229 4.229 8 C 0.120 3.880 9 N -0.592 5.592 10 C 0.074 3.926 11 C -0.229 4.229 12 C 0.122 3.878 13 C -0.439 4.439 14 H 0.078 0.922 15 C 0.051 3.949 16 N -0.800 5.800 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.270 1.270 20 H -0.261 1.261 21 C 0.227 3.773 22 N -0.854 5.854 23 C -0.156 4.156 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.143 0.857 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.291 0.709 30 H 0.400 0.600 31 H 0.400 0.600 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 0.348 -0.339 4.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.024 4.024 3 C -0.013 4.013 4 C -0.144 4.144 5 C -0.098 4.098 6 C -0.057 4.057 7 C -0.234 4.234 8 C -0.037 4.037 9 N -0.307 5.307 10 C -0.074 4.074 11 C -0.251 4.251 12 C 0.114 3.886 13 C -0.469 4.469 14 H 0.096 0.904 15 C -0.168 4.168 16 N -0.425 5.425 17 Si 0.788 3.212 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.185 1.185 21 C 0.119 3.881 22 N -0.391 5.391 23 C -0.182 4.182 24 H 0.163 0.837 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.230 0.770 31 H 0.229 0.771 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.463 0.753 -0.890 5.585 hybrid contribution 0.403 -0.490 1.825 1.932 sum -5.060 0.262 0.935 5.152 Atomic orbital electron populations 1.81204 1.13051 1.10399 1.10140 1.25861 0.92638 0.91957 0.91948 1.15696 0.82977 1.02186 1.00418 1.20599 0.93626 1.00500 0.99722 1.20813 0.93432 0.97469 0.98076 1.18444 0.91619 0.98489 0.97160 1.19573 0.92164 1.12947 0.98718 1.22547 0.89801 0.95227 0.96151 1.67364 1.08347 1.24962 1.30040 1.21981 0.99093 0.96240 0.90098 1.21967 0.96146 1.07785 0.99236 1.18022 0.91477 0.87421 0.91728 1.19531 1.00947 1.34616 0.91796 0.90410 1.26571 0.94102 0.93860 1.02296 1.69747 1.15589 1.30155 1.27014 0.85401 0.79827 0.78889 0.77083 1.19276 1.19467 1.18512 1.17722 0.90352 0.90430 0.89592 1.42410 1.09592 1.48627 1.38430 1.20473 0.91456 1.04029 1.02219 0.83729 0.84884 0.83936 0.84931 0.86603 0.89749 0.77017 0.77072 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.70 18.54 19.01 0.35 -14.35 16 2 C 0.29 8.08 15.31 88.33 1.35 9.43 16 3 C -0.01 -0.23 5.74 -21.28 -0.12 -0.35 16 4 C -0.12 -3.13 9.68 22.27 0.22 -2.92 16 5 C -0.08 -2.35 9.67 22.24 0.22 -2.13 16 6 C -0.05 -1.77 4.51 -19.88 -0.09 -1.86 16 7 C -0.23 -9.35 4.57 -19.50 -0.09 -9.44 16 8 C 0.12 4.91 10.92 85.04 0.93 5.84 16 9 N -0.59 -26.18 10.31 -196.08 -2.02 -28.20 16 10 C 0.07 3.27 11.08 84.20 0.93 4.20 16 11 C -0.23 -10.66 8.73 22.56 0.20 -10.46 16 12 C 0.12 5.51 4.74 -20.91 -0.10 5.41 16 13 C -0.44 -19.51 7.21 23.37 0.17 -19.34 16 14 H 0.08 3.50 7.18 -2.91 -0.02 3.48 16 15 C 0.05 2.16 5.25 85.34 0.45 2.61 16 16 N -0.80 -35.24 10.80 21.87 0.24 -35.00 16 17 Si 0.97 33.79 29.58 68.60 2.03 35.82 16 18 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 21 C 0.23 7.31 6.12 38.59 0.24 7.55 16 22 N -0.85 -27.02 8.37 -50.86 -0.43 -27.45 16 23 C -0.16 -4.31 9.59 22.66 0.22 -4.09 16 24 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 25 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 26 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 27 H 0.13 5.23 8.06 -2.91 -0.02 5.20 16 28 H 0.12 5.60 6.14 -2.91 -0.02 5.58 16 29 H 0.29 11.74 8.29 -92.71 -0.77 10.97 16 30 H 0.40 14.96 6.59 -92.71 -0.61 14.35 16 31 H 0.40 10.18 8.84 -92.71 -0.82 9.36 16 32 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -50.92 289.39 4.45 -46.47 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.23 Total: 38.26 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.51 Total: -15.55 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -1.86 Total: -105.00 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -50.92 4.45 -46.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244090981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.893 kcal (2) G-P(sol) polarization free energy of solvation -50.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds