Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48507 * 109.47096 * 274.43552 * 3 2 1 5 5 H 1.48498 * 109.47565 * 34.43496 * 3 2 1 6 6 H 1.48500 * 109.47257 * 154.43526 * 3 2 1 7 7 C 1.40036 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00420 * 163.12884 * 7 2 1 9 9 C 1.41545 * 119.99525 * 343.13220 * 7 2 1 10 10 C 1.41199 * 120.98018 * 336.11424 * 9 7 2 11 11 C 1.37645 * 119.11110 * 179.97438 * 10 9 7 12 12 N 1.31980 * 121.18025 * 359.97438 * 11 10 9 13 13 C 1.32882 * 122.17798 * 0.02562 * 12 11 10 14 14 C 1.48079 * 119.63043 * 179.97438 * 13 12 11 15 15 C 1.35863 * 126.68865 * 180.02562 * 14 13 12 16 16 N 1.36197 * 109.80081 * 179.97438 * 15 14 13 17 17 H 0.96997 * 124.89132 * 180.02562 * 16 15 14 18 18 C 1.37661 * 110.22246 * 359.97438 * 16 15 14 19 19 C 1.38910 * 134.27209 * 179.97438 * 18 16 15 20 20 N 1.31745 * 120.28189 * 179.29332 * 19 18 16 21 21 C 1.32264 * 122.54401 * 0.60374 * 20 19 18 22 22 C 1.36729 * 121.26668 * 359.63242 * 21 20 19 23 23 C 1.39592 * 118.71730 * 359.97438 * 22 21 20 24 24 C 1.39093 * 120.73810 * 359.97438 * 13 12 11 25 25 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43839 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.41135 * 179.71838 * 11 10 9 28 28 H 1.08004 * 125.09554 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.85863 * 0.02562 * 19 18 16 30 30 H 1.07992 * 119.36944 * 179.60946 * 21 20 19 31 31 H 1.07994 * 120.63813 * 179.97438 * 22 21 20 32 32 H 1.07993 * 120.62962 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3951 2.1006 -1.3960 5 1 1.4890 2.6238 0.7917 6 1 3.5827 1.4150 0.6042 7 6 2.0077 -1.2127 -0.0005 8 1 3.0528 -1.2327 -0.2720 9 6 1.3456 -2.4123 0.3546 10 6 0.1909 -2.3920 1.1669 11 6 -0.4227 -3.5815 1.4883 12 7 0.0490 -4.7338 1.0508 13 6 1.1316 -4.8099 0.2840 14 6 1.6122 -6.1333 -0.1749 15 6 2.6959 -6.3768 -0.9573 16 7 2.8213 -7.7165 -1.1678 17 1 3.5207 -8.1321 -1.6960 18 6 1.8131 -8.3961 -0.5222 19 6 1.4686 -9.7366 -0.4035 20 7 0.4234 -10.0928 0.3151 21 6 -0.3442 -9.2144 0.9384 22 6 -0.0847 -7.8735 0.8742 23 6 1.0153 -7.4379 0.1334 24 6 1.8184 -3.6605 -0.0925 25 1 -0.4850 0.8400 0.0004 26 1 -0.2060 -1.4557 1.5305 27 1 -1.3037 -3.5720 2.1131 28 1 3.3585 -5.6212 -1.3529 29 1 2.0671 -10.4909 -0.8927 30 1 -1.1925 -9.5629 1.5087 31 1 -0.7185 -7.1651 1.3869 32 1 2.6978 -3.7244 -0.7161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245393634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = 87.638142 kcal Electronic energy + Delta-G solvation = -18261.888621 eV Core-core repulsion = 15380.065271 eV Total energy + Delta-G solvation = -2881.823350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23826 -38.27203 -37.64925 -34.21672 -32.37443 -30.84628 -30.47173 -29.66593 -27.82702 -25.93919 -23.37608 -22.48639 -22.32976 -21.05217 -19.52356 -18.19931 -17.03646 -16.41524 -15.46729 -15.35686 -14.66216 -14.60900 -14.50310 -14.07416 -13.81984 -13.62704 -12.73412 -12.63222 -12.34262 -12.22473 -11.90969 -11.48589 -11.43068 -11.15647 -10.95381 -10.36619 -9.92634 -9.81557 -9.44320 -9.34503 -8.49356 -8.14676 -8.08198 -7.98652 -6.95838 -6.82409 -4.64081 1.22219 1.73501 2.30097 2.71495 2.98964 3.02867 3.11688 3.20423 3.53874 3.81480 4.24811 4.65977 4.72895 5.00115 5.02993 5.11853 5.34587 5.65766 5.68089 5.76798 6.01397 6.09267 6.18058 6.50866 6.68256 6.71413 6.85463 6.89467 7.01415 7.07656 7.24287 7.32677 7.45348 7.60244 7.81071 8.06948 8.29157 8.40890 8.69691 8.70171 9.57346 10.02588 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040080 B = 0.004435 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.433706 B = 6311.869904 C = 6935.597936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.130 3.870 10 C -0.213 4.213 11 C 0.088 3.912 12 N -0.563 5.563 13 C 0.191 3.809 14 C -0.095 4.095 15 C 0.064 3.936 16 N -0.582 5.582 17 H 0.416 0.584 18 C 0.030 3.970 19 C 0.097 3.903 20 N -0.473 5.473 21 C 0.034 3.966 22 C -0.092 4.092 23 C -0.050 4.050 24 C -0.261 4.261 25 H 0.283 0.717 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.178 0.822 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -8.637 -1.648 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.122 3.878 10 C -0.235 4.235 11 C -0.064 4.064 12 N -0.278 5.278 13 C 0.056 3.944 14 C -0.102 4.102 15 C -0.066 4.066 16 N -0.185 5.185 17 H 0.253 0.747 18 C -0.079 4.079 19 C -0.071 4.071 20 N -0.182 5.182 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.062 4.062 24 C -0.284 4.284 25 H 0.094 0.906 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.195 0.805 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.167 -10.148 -1.342 10.715 hybrid contribution 1.287 2.511 -0.654 2.896 sum 4.454 -7.637 -1.996 9.064 Atomic orbital electron populations 1.69773 1.07729 1.29593 1.33947 1.25959 0.94748 1.01530 0.91896 0.86262 0.80749 0.80361 0.79190 1.19435 1.19875 1.18304 1.19582 0.97853 0.90814 1.40588 0.90096 1.17724 0.90678 0.91947 0.87474 1.22228 1.00337 0.98181 1.02763 1.21941 0.98044 0.88477 0.97918 1.67301 1.14656 1.28954 1.16891 1.18365 0.92226 0.88945 0.94831 1.18901 0.96941 0.90985 1.03379 1.21956 0.99681 0.84032 1.00893 1.41420 1.25644 1.05746 1.45684 0.74691 1.19431 0.92974 0.95129 1.00405 1.21632 0.95855 0.90288 0.99291 1.67464 1.04494 1.38616 1.07603 1.22038 0.99620 0.89432 1.00448 1.21521 0.96075 0.96534 0.97102 1.19271 0.95936 0.92340 0.98621 1.21712 1.04692 0.92836 1.09161 0.90566 0.85675 0.86090 0.80466 0.83529 0.83238 0.83584 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 10.92 55.55 0.61 -18.80 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.46 -11.54 9.12 -37.65 -0.34 -11.89 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 9 C 0.13 3.33 5.60 -106.56 -0.60 2.74 16 10 C -0.21 -5.37 8.79 -38.67 -0.34 -5.71 16 11 C 0.09 2.07 11.15 -17.70 -0.20 1.88 16 12 N -0.56 -13.32 9.22 -9.97 -0.09 -13.41 16 13 C 0.19 4.38 6.75 -83.06 -0.56 3.82 16 14 C -0.09 -1.84 6.25 -103.28 -0.65 -2.49 16 15 C 0.06 0.97 11.24 -16.46 -0.19 0.79 16 16 N -0.58 -7.33 6.02 -10.44 -0.06 -7.39 16 17 H 0.42 3.43 8.96 -40.82 -0.37 3.06 16 18 C 0.03 0.46 7.32 -84.00 -0.61 -0.16 16 19 C 0.10 1.37 11.25 -17.34 -0.20 1.17 16 20 N -0.47 -7.38 10.32 -13.38 -0.14 -7.51 16 21 C 0.03 0.53 11.11 -17.91 -0.20 0.33 16 22 C -0.09 -1.62 9.86 -39.62 -0.39 -2.01 16 23 C -0.05 -0.92 6.30 -104.96 -0.66 -1.58 16 24 C -0.26 -6.15 9.40 -38.31 -0.36 -6.51 16 25 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 26 H 0.13 3.21 6.20 -52.48 -0.33 2.89 16 27 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 28 H 0.18 2.22 7.21 -52.48 -0.38 1.84 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.15 2.64 7.37 -52.49 -0.39 2.25 16 32 H 0.10 2.10 6.98 -52.49 -0.37 1.73 16 LS Contribution 283.82 15.07 4.28 4.28 Total: -1.00 -29.81 283.82 -8.46 -38.27 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.64 Total: 9.75 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -5.38 Total: -17.83 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.31 Total: -47.11 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.81 -8.46 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245393634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.909 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds