Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48507 * 109.47096 * 274.43552 * 3 2 1 5 5 H 1.48498 * 109.47565 * 34.43496 * 3 2 1 6 6 H 1.48500 * 109.47257 * 154.43526 * 3 2 1 7 7 C 1.40036 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00420 * 163.12884 * 7 2 1 9 9 C 1.41545 * 119.99525 * 343.13220 * 7 2 1 10 10 C 1.41199 * 120.98018 * 336.11424 * 9 7 2 11 11 C 1.37645 * 119.11110 * 179.97438 * 10 9 7 12 12 N 1.31980 * 121.18025 * 359.97438 * 11 10 9 13 13 C 1.32882 * 122.17798 * 0.02562 * 12 11 10 14 14 C 1.48079 * 119.63043 * 179.97438 * 13 12 11 15 15 C 1.35863 * 126.68865 * 180.02562 * 14 13 12 16 16 N 1.36197 * 109.80081 * 179.97438 * 15 14 13 17 17 H 0.96997 * 124.89132 * 180.02562 * 16 15 14 18 18 C 1.37661 * 110.22246 * 359.97438 * 16 15 14 19 19 C 1.38910 * 134.27209 * 179.97438 * 18 16 15 20 20 N 1.31745 * 120.28189 * 179.29332 * 19 18 16 21 21 C 1.32264 * 122.54401 * 0.60374 * 20 19 18 22 22 C 1.36729 * 121.26668 * 359.63242 * 21 20 19 23 23 C 1.39592 * 118.71730 * 359.97438 * 22 21 20 24 24 C 1.39093 * 120.73810 * 359.97438 * 13 12 11 25 25 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.43839 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.41135 * 179.71838 * 11 10 9 28 28 H 1.08004 * 125.09554 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.85863 * 0.02562 * 19 18 16 30 30 H 1.07992 * 119.36944 * 179.60946 * 21 20 19 31 31 H 1.07994 * 120.63813 * 179.97438 * 22 21 20 32 32 H 1.07993 * 120.62962 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3951 2.1006 -1.3960 5 1 1.4890 2.6238 0.7917 6 1 3.5827 1.4150 0.6042 7 6 2.0077 -1.2127 -0.0005 8 1 3.0528 -1.2327 -0.2720 9 6 1.3456 -2.4123 0.3546 10 6 0.1909 -2.3920 1.1669 11 6 -0.4227 -3.5815 1.4883 12 7 0.0490 -4.7338 1.0508 13 6 1.1316 -4.8099 0.2840 14 6 1.6122 -6.1333 -0.1749 15 6 2.6959 -6.3768 -0.9573 16 7 2.8213 -7.7165 -1.1678 17 1 3.5207 -8.1321 -1.6960 18 6 1.8131 -8.3961 -0.5222 19 6 1.4686 -9.7366 -0.4035 20 7 0.4234 -10.0928 0.3151 21 6 -0.3442 -9.2144 0.9384 22 6 -0.0847 -7.8735 0.8742 23 6 1.0153 -7.4379 0.1334 24 6 1.8184 -3.6605 -0.0925 25 1 -0.4850 0.8400 0.0004 26 1 -0.2060 -1.4557 1.5305 27 1 -1.3037 -3.5720 2.1131 28 1 3.3585 -5.6212 -1.3529 29 1 2.0671 -10.4909 -0.8927 30 1 -1.1925 -9.5629 1.5087 31 1 -0.7185 -7.1651 1.3869 32 1 2.6978 -3.7244 -0.7161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245393634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = 69.565055 kcal Electronic energy + Delta-G solvation = -18262.672329 eV Core-core repulsion = 15380.065271 eV Total energy + Delta-G solvation = -2882.607058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45885 -39.99311 -38.90417 -36.01534 -33.73603 -32.62092 -31.98747 -30.86483 -29.34179 -27.77561 -24.58772 -24.13106 -23.71373 -22.67453 -21.04765 -19.50471 -18.64801 -17.73596 -17.06622 -16.69290 -16.27023 -16.02680 -15.82488 -15.73836 -15.29334 -14.86174 -14.36633 -14.22582 -14.01054 -13.60686 -13.32623 -13.05627 -12.84119 -12.72903 -12.55025 -11.97779 -11.74277 -11.27729 -11.08693 -10.57801 -9.96751 -9.91744 -9.79375 -9.45574 -8.70284 -8.35802 -6.54243 -0.02874 0.48128 0.75177 0.97112 1.39851 1.50273 1.55842 1.98576 2.09513 2.19251 2.82810 3.04729 3.61827 3.74989 3.80037 3.83338 3.87275 4.15419 4.37728 4.46359 4.59953 4.71837 4.90581 4.94059 5.01434 5.06681 5.25264 5.32870 5.45711 5.55015 5.59686 5.70995 5.94445 5.98356 6.24312 6.54737 6.63077 6.82595 6.84926 7.11199 7.76683 8.26456 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040080 B = 0.004435 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.433706 B = 6311.869904 C = 6935.597936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.241 4.241 11 C 0.084 3.916 12 N -0.576 5.576 13 C 0.193 3.807 14 C -0.161 4.161 15 C 0.107 3.893 16 N -0.553 5.553 17 H 0.442 0.558 18 C 0.025 3.975 19 C 0.115 3.885 20 N -0.488 5.488 21 C 0.043 3.957 22 C -0.123 4.123 23 C -0.077 4.077 24 C -0.280 4.280 25 H 0.291 0.709 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.208 0.792 29 H 0.192 0.808 30 H 0.172 0.828 31 H 0.127 0.873 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -9.948 -2.947 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.104 0.896 9 C 0.095 3.905 10 C -0.264 4.264 11 C -0.068 4.068 12 N -0.291 5.291 13 C 0.059 3.941 14 C -0.168 4.168 15 C -0.026 4.026 16 N -0.158 5.158 17 H 0.284 0.716 18 C -0.085 4.085 19 C -0.053 4.053 20 N -0.197 5.197 21 C -0.106 4.106 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.302 4.302 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.159 0.841 28 H 0.225 0.775 29 H 0.208 0.792 30 H 0.189 0.811 31 H 0.145 0.855 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.166 -11.514 -2.657 12.897 hybrid contribution 0.694 2.727 -0.308 2.831 sum 5.860 -8.787 -2.965 10.971 Atomic orbital electron populations 1.69834 1.09284 1.30995 1.34136 1.26860 0.95460 1.04793 0.90779 0.85127 0.79200 0.75522 0.79496 1.18534 1.19166 1.17955 1.19893 0.98318 0.91719 1.41891 0.89567 1.18136 0.91190 0.93299 0.87908 1.22189 1.01495 0.98165 1.04519 1.22284 0.98475 0.88252 0.97768 1.67437 1.15470 1.28589 1.17635 1.18905 0.91240 0.90729 0.93275 1.18900 1.00221 0.90009 1.07693 1.22324 0.97522 0.85419 0.97328 1.41367 1.25258 1.04705 1.44424 0.71601 1.19524 0.93201 0.95185 1.00572 1.22344 0.94948 0.90592 0.97435 1.67594 1.05292 1.38412 1.08418 1.22337 0.99916 0.88603 0.99745 1.21483 0.96843 0.97241 0.98785 1.19534 0.96917 0.92876 0.99558 1.21934 1.05794 0.92419 1.10083 0.89788 0.86979 0.84082 0.77503 0.79151 0.81054 0.85479 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.45 10.92 21.84 0.24 -41.21 16 2 C 0.04 1.84 5.20 85.29 0.44 2.28 16 3 Si 0.99 36.17 29.59 68.60 2.03 38.20 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.49 -25.18 9.12 23.52 0.21 -24.97 16 8 H 0.09 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.10 5.46 5.60 -21.12 -0.12 5.34 16 10 C -0.24 -12.79 8.79 22.86 0.20 -12.59 16 11 C 0.08 4.15 11.15 84.53 0.94 5.09 16 12 N -0.58 -28.35 9.22 -185.46 -1.71 -30.06 16 13 C 0.19 9.06 6.75 41.80 0.28 9.34 16 14 C -0.16 -6.18 6.25 -18.99 -0.12 -6.29 16 15 C 0.11 2.95 11.24 83.46 0.94 3.88 16 16 N -0.55 -11.75 6.02 -186.93 -1.13 -12.87 16 17 H 0.44 4.98 8.96 -92.71 -0.83 4.15 16 18 C 0.02 0.69 7.32 39.03 0.29 0.97 16 19 C 0.11 2.80 11.25 84.87 0.95 3.76 16 20 N -0.49 -14.00 10.32 -196.25 -2.03 -16.02 16 21 C 0.04 1.28 11.11 84.27 0.94 2.21 16 22 C -0.12 -4.38 9.86 22.24 0.22 -4.16 16 23 C -0.08 -2.81 6.30 -20.08 -0.13 -2.94 16 24 C -0.28 -13.45 9.40 23.09 0.22 -13.24 16 25 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 26 H 0.11 6.10 6.20 -2.91 -0.02 6.09 16 27 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 28 H 0.21 4.39 7.21 -2.91 -0.02 4.37 16 29 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.13 4.87 7.37 -2.91 -0.02 4.85 16 32 H 0.12 5.05 6.98 -2.91 -0.02 5.03 16 Total: -1.00 -67.71 283.82 3.03 -64.68 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.35 Total: 28.60 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 5.27 Total: -31.31 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -4.62 Total: -100.16 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -67.71 3.03 -64.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245393634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.246 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds