Wall clock time and date at job start Mon Mar 30 2020 00:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46872 * 299.99689 * 3 2 1 6 6 H 1.48506 * 109.47200 * 59.99337 * 3 2 1 7 7 C 1.39886 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.40671 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.33747 * 119.96087 * 359.97438 * 9 7 2 11 11 C 1.31286 * 121.63615 * 179.97438 * 10 9 7 12 12 C 1.39058 * 121.37239 * 0.02562 * 11 10 9 13 13 C 1.38269 * 119.76137 * 0.25832 * 12 11 10 14 14 C 1.39841 * 118.47364 * 359.49999 * 13 12 11 15 15 C 1.47548 * 120.66222 * 180.26318 * 14 13 12 16 16 C 1.41825 * 119.96877 * 130.23631 * 15 14 13 17 17 C 1.35623 * 119.61935 * 180.02562 * 16 15 14 18 18 C 1.41079 * 119.56086 * 359.97438 * 17 16 15 19 19 C 1.38053 * 133.33801 * 180.02562 * 18 17 16 20 20 N 1.33456 * 107.64805 * 180.02562 * 19 18 17 21 21 C 1.30839 * 109.92122 * 359.97438 * 20 19 18 22 22 N 1.35948 * 109.19570 * 0.02562 * 21 20 19 23 23 C 1.36429 * 132.92203 * 180.32953 * 22 21 20 24 24 H 0.96995 * 120.00505 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.31451 * 180.02562 * 11 10 9 26 26 H 1.08002 * 120.11655 * 179.97438 * 12 11 10 27 27 H 1.07993 * 120.76138 * 179.74757 * 13 12 11 28 28 H 1.07998 * 120.19035 * 359.97438 * 16 15 14 29 29 H 1.07998 * 120.22087 * 180.02562 * 17 16 15 30 30 H 1.07997 * 126.17585 * 359.97438 * 19 18 17 31 31 H 1.07988 * 125.40129 * 179.97438 * 21 20 19 32 32 H 1.07998 * 119.86974 * 359.92911 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3465 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8835 2.3966 1.2125 7 6 2.0080 -1.2114 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3047 -2.4297 0.0005 10 7 -0.0328 -2.4288 0.0005 11 6 -0.7221 -3.5462 0.0000 12 6 -0.0918 -4.7857 0.0000 13 6 1.2892 -4.8534 0.0059 14 6 2.0153 -3.6583 0.0011 15 6 3.4907 -3.6742 0.0012 16 6 4.2078 -2.8921 -0.9398 17 6 5.5638 -2.9125 -0.9337 18 6 6.2437 -3.7115 0.0096 19 6 7.5800 -3.9425 0.2678 20 7 7.6526 -4.8001 1.2878 21 6 6.4486 -5.1215 1.6866 22 7 5.5348 -4.4686 0.9205 23 6 4.1708 -4.4449 0.9190 24 1 -0.4851 0.8400 -0.0004 25 1 -1.8012 -3.5017 -0.0004 26 1 -0.6789 -5.6922 0.0000 27 1 1.7954 -5.8073 0.0101 28 1 3.6770 -2.2845 -1.6577 29 1 6.1196 -2.3204 -1.6457 30 1 8.4157 -3.5084 -0.2608 31 1 6.2175 -5.7987 2.4953 32 1 3.6218 -5.0356 1.6374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245897696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:28 Heat of formation + Delta-G solvation = 117.133570 kcal Electronic energy + Delta-G solvation = -18777.772171 eV Core-core repulsion = 15897.227839 eV Total energy + Delta-G solvation = -2880.544332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20399 -38.63238 -36.64868 -33.93215 -32.94254 -32.01752 -30.49952 -28.73009 -27.56038 -25.79961 -23.74811 -22.31955 -21.54505 -21.38399 -20.41851 -17.73269 -17.36554 -16.33043 -15.71476 -15.29967 -15.27651 -14.59026 -14.38904 -14.19474 -13.92342 -13.14972 -12.97027 -12.53011 -12.38385 -11.82524 -11.58606 -11.37737 -11.35910 -11.23411 -10.91699 -10.59434 -10.29480 -9.99332 -9.95766 -9.61987 -8.95663 -8.30143 -7.83402 -7.70391 -6.98163 -6.65984 -4.77958 1.25056 1.65691 2.52867 2.76786 2.96620 3.00921 3.05022 3.10527 3.43487 3.76060 3.96000 4.51162 4.92504 4.95273 5.16988 5.36794 5.42871 5.52584 5.68494 5.80413 5.88323 5.94431 6.25414 6.32923 6.37971 6.55252 6.66186 6.73555 6.86864 6.93649 7.04812 7.12807 7.35028 7.46846 7.64774 7.78374 7.98876 8.22145 8.37877 8.65487 9.83772 10.03115 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.007364 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.579733 B = 3801.382227 C = 5108.060711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.414 4.414 8 H 0.094 0.906 9 C 0.270 3.730 10 N -0.479 5.479 11 C 0.138 3.862 12 C -0.319 4.319 13 C -0.028 4.028 14 C -0.244 4.244 15 C 0.028 3.972 16 C -0.084 4.084 17 C -0.103 4.103 18 C 0.010 3.990 19 C -0.049 4.049 20 N -0.460 5.460 21 C 0.110 3.890 22 N -0.349 5.349 23 C -0.002 4.002 24 H 0.277 0.723 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.172 0.828 31 H 0.203 0.797 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -3.053 -0.728 5.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.161 4.161 3 Si 0.728 3.272 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.444 4.444 8 H 0.112 0.888 9 C 0.147 3.853 10 N -0.190 5.190 11 C -0.031 4.031 12 C -0.342 4.342 13 C -0.052 4.052 14 C -0.249 4.249 15 C 0.024 3.976 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.102 4.102 19 C -0.204 4.204 20 N -0.174 5.174 21 C -0.163 4.163 22 N -0.018 5.018 23 C -0.123 4.123 24 H 0.088 0.912 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.189 0.811 31 H 0.220 0.780 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.950 -2.473 -0.230 5.538 hybrid contribution -0.156 0.071 -0.220 0.279 sum 4.794 -2.402 -0.450 5.381 Atomic orbital electron populations 1.70173 1.07283 1.28314 1.26437 1.26141 0.94965 1.01449 0.93523 0.86288 0.81126 0.80850 0.78961 1.17967 1.19438 1.19528 1.19800 0.94965 0.89372 1.40226 0.88813 1.18501 0.87996 0.90727 0.88052 1.68822 1.06911 1.26574 1.16722 1.22674 0.98996 0.88794 0.92655 1.21220 0.94507 0.98032 1.20463 1.20919 0.93910 0.95514 0.94861 1.19044 0.89288 0.94795 1.21795 1.18503 0.93587 0.93164 0.92341 1.21453 0.93103 0.97599 0.98329 1.20370 0.94163 0.99443 0.98315 1.19723 0.92988 1.00808 0.96642 1.22315 0.93251 1.04254 1.00608 1.69830 1.22096 1.13535 1.11949 1.24781 0.82416 1.06222 1.02898 1.42811 1.06163 1.29541 1.23284 1.22014 0.79780 1.06883 1.03586 0.91203 0.86103 0.88420 0.88443 0.83881 0.84237 0.81062 0.78031 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.31 11.46 55.54 0.64 -16.67 16 2 C 0.07 1.56 5.49 -17.35 -0.10 1.47 16 3 Si 0.90 17.37 29.56 -169.99 -5.02 12.34 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.41 -10.03 7.95 -38.05 -0.30 -10.33 16 8 H 0.09 2.15 5.22 -52.49 -0.27 1.88 16 9 C 0.27 6.69 6.56 -84.70 -0.56 6.14 16 10 N -0.48 -12.17 7.84 -10.91 -0.09 -12.26 16 11 C 0.14 3.07 11.17 -17.48 -0.20 2.88 16 12 C -0.32 -6.50 10.10 -39.27 -0.40 -6.89 16 13 C -0.03 -0.56 9.63 -38.97 -0.38 -0.93 16 14 C -0.24 -5.33 5.53 -104.09 -0.58 -5.91 16 15 C 0.03 0.54 5.02 -104.89 -0.53 0.01 16 16 C -0.08 -1.52 7.56 -39.15 -0.30 -1.82 16 17 C -0.10 -1.68 10.08 -39.44 -0.40 -2.08 16 18 C 0.01 0.16 6.79 -84.06 -0.57 -0.41 16 19 C -0.05 -0.81 12.01 -16.91 -0.20 -1.01 16 20 N -0.46 -7.96 11.19 -13.72 -0.15 -8.12 16 21 C 0.11 1.76 12.78 -89.26 -1.14 0.62 16 22 N -0.35 -6.06 2.95 -61.52 -0.18 -6.24 16 23 C 0.00 -0.04 10.51 -15.67 -0.16 -0.20 16 24 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 25 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.14 2.61 7.27 -52.49 -0.38 2.22 16 29 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.20 2.45 8.06 -52.49 -0.42 2.02 16 32 H 0.16 2.47 8.02 -52.49 -0.42 2.05 16 LS Contribution 282.62 15.07 4.26 4.26 Total: -1.00 -28.22 282.62 -9.09 -37.31 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.75 Total: 7.84 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -5.79 Total: -18.47 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.22 Total: -43.29 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.02 Total: 12.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.22 -9.09 -37.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245897696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.440 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds