Wall clock time and date at job start Mon Mar 30 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46872 * 299.99689 * 3 2 1 6 6 H 1.48506 * 109.47200 * 59.99337 * 3 2 1 7 7 C 1.39886 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.40671 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.33747 * 119.96087 * 359.97438 * 9 7 2 11 11 C 1.31286 * 121.63615 * 179.97438 * 10 9 7 12 12 C 1.39058 * 121.37239 * 0.02562 * 11 10 9 13 13 C 1.38269 * 119.76137 * 0.25832 * 12 11 10 14 14 C 1.39841 * 118.47364 * 359.49999 * 13 12 11 15 15 C 1.47548 * 120.66222 * 180.26318 * 14 13 12 16 16 C 1.41825 * 119.96877 * 130.23631 * 15 14 13 17 17 C 1.35623 * 119.61935 * 180.02562 * 16 15 14 18 18 C 1.41079 * 119.56086 * 359.97438 * 17 16 15 19 19 C 1.38053 * 133.33801 * 180.02562 * 18 17 16 20 20 N 1.33456 * 107.64805 * 180.02562 * 19 18 17 21 21 C 1.30839 * 109.92122 * 359.97438 * 20 19 18 22 22 N 1.35948 * 109.19570 * 0.02562 * 21 20 19 23 23 C 1.36429 * 132.92203 * 180.32953 * 22 21 20 24 24 H 0.96995 * 120.00505 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.31451 * 180.02562 * 11 10 9 26 26 H 1.08002 * 120.11655 * 179.97438 * 12 11 10 27 27 H 1.07993 * 120.76138 * 179.74757 * 13 12 11 28 28 H 1.07998 * 120.19035 * 359.97438 * 16 15 14 29 29 H 1.07998 * 120.22087 * 180.02562 * 17 16 15 30 30 H 1.07997 * 126.17585 * 359.97438 * 19 18 17 31 31 H 1.07988 * 125.40129 * 179.97438 * 21 20 19 32 32 H 1.07998 * 119.86974 * 359.92911 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3465 0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8835 2.3966 1.2125 7 6 2.0080 -1.2114 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3047 -2.4297 0.0005 10 7 -0.0328 -2.4288 0.0005 11 6 -0.7221 -3.5462 0.0000 12 6 -0.0918 -4.7857 0.0000 13 6 1.2892 -4.8534 0.0059 14 6 2.0153 -3.6583 0.0011 15 6 3.4907 -3.6742 0.0012 16 6 4.2078 -2.8921 -0.9398 17 6 5.5638 -2.9125 -0.9337 18 6 6.2437 -3.7115 0.0096 19 6 7.5800 -3.9425 0.2678 20 7 7.6526 -4.8001 1.2878 21 6 6.4486 -5.1215 1.6866 22 7 5.5348 -4.4686 0.9205 23 6 4.1708 -4.4449 0.9190 24 1 -0.4851 0.8400 -0.0004 25 1 -1.8012 -3.5017 -0.0004 26 1 -0.6789 -5.6922 0.0000 27 1 1.7954 -5.8073 0.0101 28 1 3.6770 -2.2845 -1.6577 29 1 6.1196 -2.3204 -1.6457 30 1 8.4157 -3.5084 -0.2608 31 1 6.2175 -5.7987 2.4953 32 1 3.6218 -5.0356 1.6374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245897696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:27 Heat of formation + Delta-G solvation = 104.363227 kcal Electronic energy + Delta-G solvation = -18778.325935 eV Core-core repulsion = 15897.227839 eV Total energy + Delta-G solvation = -2881.098096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.49835 -40.26420 -38.05419 -35.62182 -34.27556 -33.52653 -32.17551 -30.21925 -28.93251 -27.45318 -25.18233 -23.72746 -23.19124 -22.69042 -21.90290 -19.43855 -18.67529 -17.73528 -17.32090 -16.72427 -16.63263 -16.13719 -15.95270 -15.62277 -15.23027 -14.57574 -14.29284 -14.11186 -14.01785 -13.35541 -13.10982 -12.92052 -12.84454 -12.73109 -12.37517 -12.11904 -11.75400 -11.45651 -11.29416 -11.26434 -10.47156 -9.93089 -9.54958 -9.31702 -8.38600 -8.26354 -6.53248 -0.10156 0.28768 0.90427 1.15618 1.38899 1.50463 1.52537 1.81049 2.15973 2.17716 2.59701 2.80612 3.63753 3.76830 3.88117 3.90149 4.05589 4.16106 4.18472 4.30483 4.42373 4.63286 4.76577 4.88444 4.92042 5.03169 5.15938 5.26879 5.35260 5.50686 5.60705 5.69860 5.81278 5.85792 6.11653 6.26323 6.35063 6.67364 6.92150 6.94718 8.13443 8.36504 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.007364 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.579733 B = 3801.382227 C = 5108.060711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.027 3.973 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.444 4.444 8 H 0.098 0.902 9 C 0.240 3.760 10 N -0.519 5.519 11 C 0.114 3.886 12 C -0.310 4.310 13 C -0.036 4.036 14 C -0.242 4.242 15 C 0.003 3.997 16 C -0.107 4.107 17 C -0.086 4.086 18 C -0.017 4.017 19 C -0.043 4.043 20 N -0.483 5.483 21 C 0.120 3.880 22 N -0.360 5.360 23 C 0.010 3.990 24 H 0.280 0.720 25 H 0.138 0.862 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.171 0.829 30 H 0.200 0.800 31 H 0.238 0.762 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -4.019 -0.428 7.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.474 4.474 8 H 0.116 0.884 9 C 0.117 3.883 10 N -0.232 5.232 11 C -0.053 4.053 12 C -0.333 4.333 13 C -0.060 4.060 14 C -0.247 4.247 15 C 0.000 4.000 16 C -0.128 4.128 17 C -0.105 4.105 18 C -0.127 4.127 19 C -0.197 4.197 20 N -0.197 5.197 21 C -0.154 4.154 22 N -0.030 5.030 23 C -0.111 4.111 24 H 0.091 0.909 25 H 0.156 0.844 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.189 0.811 30 H 0.217 0.783 31 H 0.254 0.746 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.846 -3.463 0.057 7.672 hybrid contribution -0.623 0.148 -0.268 0.694 sum 6.223 -3.315 -0.211 7.054 Atomic orbital electron populations 1.70264 1.08759 1.29247 1.28449 1.26941 0.95608 1.04433 0.92659 0.85276 0.79786 0.76650 0.78959 1.17566 1.18719 1.19443 1.20027 0.95284 0.90055 1.42015 0.88417 1.18920 0.88319 0.92250 0.88829 1.68751 1.07749 1.28364 1.18287 1.23084 0.99983 0.89139 0.93082 1.21562 0.95008 0.98424 1.18300 1.21293 0.94077 0.96320 0.94323 1.19283 0.90832 0.94436 1.20195 1.18462 0.92597 0.94950 0.94001 1.21357 0.93953 0.98618 0.98893 1.20669 0.93457 0.98427 0.97959 1.20065 0.93576 1.01671 0.97348 1.22863 0.93723 1.03193 0.99941 1.69905 1.22717 1.14358 1.12675 1.25597 0.81854 1.05321 1.02606 1.42968 1.06075 1.30104 1.23834 1.22094 0.80154 1.05843 1.02963 0.90872 0.84443 0.85307 0.85423 0.84963 0.81126 0.78346 0.74633 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.26 11.46 21.82 0.25 -38.01 16 2 C 0.03 1.29 5.49 85.24 0.47 1.75 16 3 Si 0.97 36.32 29.56 68.60 2.03 38.35 16 4 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.44 -22.20 7.95 23.26 0.18 -22.01 16 8 H 0.10 4.61 5.22 -2.91 -0.02 4.60 16 9 C 0.24 12.27 6.56 40.36 0.26 12.53 16 10 N -0.52 -27.26 7.84 -188.42 -1.48 -28.74 16 11 C 0.11 5.13 11.17 84.97 0.95 6.08 16 12 C -0.31 -12.25 10.10 22.47 0.23 -12.02 16 13 C -0.04 -1.41 9.63 22.67 0.22 -1.19 16 14 C -0.24 -10.62 5.53 -19.52 -0.11 -10.73 16 15 C 0.00 0.13 5.02 -20.04 -0.10 0.03 16 16 C -0.11 -3.87 7.56 22.55 0.17 -3.70 16 17 C -0.09 -2.63 10.08 22.36 0.23 -2.41 16 18 C -0.02 -0.53 6.79 38.82 0.26 -0.27 16 19 C -0.04 -1.27 12.01 84.40 1.01 -0.26 16 20 N -0.48 -15.21 11.19 -197.32 -2.21 -17.42 16 21 C 0.12 3.44 12.78 179.87 2.30 5.74 16 22 N -0.36 -11.59 2.95 -348.57 -1.03 -12.62 16 23 C 0.01 0.33 10.51 83.87 0.88 1.21 16 24 H 0.28 13.00 8.30 -92.71 -0.77 12.23 16 25 H 0.14 5.44 8.06 -2.91 -0.02 5.41 16 26 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.13 4.96 7.27 -2.91 -0.02 4.94 16 29 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.20 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.24 4.77 8.06 -2.92 -0.02 4.75 16 32 H 0.18 5.07 8.02 -2.91 -0.02 5.05 16 Total: -1.00 -61.87 282.62 5.67 -56.19 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.15 Total: 27.48 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 6.96 Total: -25.24 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.46 Total: -96.79 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -61.87 5.67 -56.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245897696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.558 kcal (2) G-P(sol) polarization free energy of solvation -61.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds