Wall clock time and date at job start Sun Mar 29 2020 23:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99577 * 2 1 4 4 C 1.50703 * 109.47003 * 179.97438 * 3 2 1 5 5 N 1.30012 * 127.33122 * 270.00228 * 4 3 2 6 6 O 1.20660 * 112.31683 * 179.97438 * 5 4 3 7 7 C 1.33514 * 113.15959 * 359.71736 * 6 5 4 8 8 C 1.37416 * 106.32920 * 0.44644 * 7 6 5 9 9 C 1.47320 * 128.57244 * 179.85593 * 8 7 6 10 10 O 1.21632 * 120.00743 * 173.99539 * 9 8 7 11 11 N 1.34783 * 119.99718 * 353.99470 * 9 8 7 12 12 C 1.36969 * 119.99995 * 354.53437 * 11 9 8 13 13 H 1.07993 * 120.00257 * 313.37280 * 12 11 9 14 14 C 1.38984 * 119.99991 * 133.09901 * 12 11 9 15 15 N 1.31406 * 119.99877 * 170.12956 * 14 12 11 16 16 Si 1.86807 * 119.99803 * 350.13060 * 14 12 11 17 17 H 1.48499 * 109.46933 * 91.48683 * 16 14 12 18 18 H 1.48498 * 109.46979 * 211.47973 * 16 14 12 19 19 H 1.48498 * 109.47251 * 331.48339 * 16 14 12 20 20 C 1.46507 * 119.99661 * 174.53131 * 11 9 8 21 21 C 1.47193 * 109.47055 * 90.13500 * 20 11 9 22 22 N 7.41867 * 112.40213 * 300.52948 * 2 1 3 23 23 H 1.08993 * 109.46979 * 60.00187 * 1 2 3 24 24 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46970 * 300.00384 * 1 2 3 26 26 H 1.08997 * 109.47409 * 59.99900 * 3 2 1 27 27 H 1.09003 * 109.47411 * 299.99350 * 3 2 1 28 28 H 1.08001 * 126.83331 * 180.31160 * 7 6 5 29 29 H 0.97002 * 119.99410 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.46818 * 210.13415 * 20 11 9 31 31 H 1.08996 * 109.47039 * 330.12977 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2980 1.1245 1.0347 6 8 5.4599 1.0320 0.7227 7 6 5.6485 1.0104 -0.5989 8 6 4.4025 1.1153 -1.1688 9 6 4.0454 1.1431 -2.5978 10 8 2.8762 1.1312 -2.9329 11 7 5.0143 1.1817 -3.5339 12 6 6.3253 1.3080 -3.1578 13 1 6.6074 2.0476 -2.4231 14 6 7.2916 0.4806 -3.7174 15 7 8.5659 0.7241 -3.5086 16 14 6.7788 -0.9776 -4.7664 17 1 6.7102 -0.5629 -6.1907 18 1 7.7739 -2.0696 -4.6163 19 1 5.4449 -1.4593 -4.3262 20 6 4.6652 1.0885 -4.9537 21 6 4.4361 2.4390 -5.4923 22 7 4.2563 3.4841 -5.9079 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 6.5927 0.9292 -1.1169 29 1 9.2403 0.1467 -3.8996 30 1 5.4815 0.6138 -5.4981 31 1 3.7589 0.4936 -5.0667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324087610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:47 Heat of formation + Delta-G solvation = 32.794905 kcal Electronic energy + Delta-G solvation = -20047.327503 eV Core-core repulsion = 16719.983958 eV Total energy + Delta-G solvation = -3327.343545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.30005 -39.19722 -37.68122 -36.08321 -35.00452 -33.43186 -32.38239 -31.53040 -28.38549 -27.76425 -25.66532 -25.40475 -23.33859 -20.71814 -19.78802 -18.83064 -17.45317 -17.19511 -16.59996 -16.06040 -15.88916 -15.73132 -15.48655 -14.95399 -14.26511 -14.09911 -13.64360 -13.17915 -12.96442 -12.53378 -12.45857 -12.29157 -12.02244 -11.88460 -11.54532 -11.37288 -11.24967 -10.96539 -10.49444 -10.26475 -9.69781 -9.64852 -9.48180 -9.13515 -8.98081 -8.28608 -6.83356 -4.65653 1.84296 2.10491 2.79070 2.97252 3.01667 3.03546 3.30428 3.67261 3.78158 3.80114 4.04637 4.26925 4.49557 4.62731 4.78741 4.92826 5.31771 5.44260 5.52372 5.55035 5.61912 5.67417 5.72448 5.89118 5.90776 6.27307 6.52115 6.90317 7.24095 7.62736 7.78466 8.05323 8.51144 8.71545 8.85535 9.19247 10.22656 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.007841 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.315137 B = 3570.163405 C = 4277.263945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.150 3.850 4 C 0.048 3.952 5 N -0.357 5.357 6 O 0.082 5.918 7 C 0.011 3.989 8 C -0.222 4.222 9 C 0.572 3.428 10 O -0.573 6.573 11 N -0.459 5.459 12 C -0.368 4.368 13 H 0.114 0.886 14 C 0.073 3.927 15 N -0.845 5.845 16 Si 0.872 3.128 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.251 1.251 20 C 0.192 3.808 21 C 0.215 3.785 22 N -0.448 5.448 23 H 0.045 0.955 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.260 0.740 29 H 0.284 0.716 30 H 0.107 0.893 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -3.523 3.419 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.073 3.927 4 C -0.115 4.115 5 N -0.066 5.066 6 O 0.021 5.979 7 C -0.070 4.070 8 C -0.230 4.230 9 C 0.363 3.637 10 O -0.456 6.456 11 N -0.181 5.181 12 C -0.494 4.494 13 H 0.131 0.869 14 C -0.138 4.138 15 N -0.477 5.477 16 Si 0.698 3.302 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.174 1.174 20 C 0.066 3.934 21 C -0.103 4.103 22 N -0.126 5.126 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.275 0.725 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.911 -2.189 3.916 8.240 hybrid contribution 0.017 -0.845 -1.362 1.603 sum -6.894 -3.034 2.554 7.954 Atomic orbital electron populations 1.22710 0.80835 1.02661 0.99945 1.87929 1.19643 1.26849 1.95429 1.20453 0.84931 0.85603 1.01716 1.24253 0.96818 1.02703 0.87775 1.73545 0.90143 1.18750 1.24123 1.84549 1.21031 1.66976 1.25303 1.28344 1.02741 0.94751 0.81115 1.21955 0.92285 1.13918 0.94834 1.17068 0.84667 0.78373 0.83562 1.90678 1.18567 1.54325 1.81990 1.43332 1.07230 1.66222 1.01321 1.19222 0.80236 1.20419 1.29542 0.86915 1.25535 0.94838 0.97044 0.96428 1.69639 0.99876 1.37047 1.41185 0.86937 0.80526 0.82372 0.80396 1.19124 1.20347 1.17414 1.19326 1.03284 0.86148 0.84668 1.29946 0.91901 0.95616 0.92878 1.81154 1.10329 1.11589 1.09577 0.93635 0.89673 0.94347 0.92159 0.89757 0.72506 0.90511 0.87595 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.58 10.69 -35.23 -0.38 -6.96 16 3 C 0.15 2.54 6.16 36.01 0.22 2.77 16 4 C 0.05 0.92 7.21 -79.75 -0.58 0.34 16 5 N -0.36 -6.75 12.01 34.79 0.42 -6.34 16 6 O 0.08 1.48 11.06 18.60 0.21 1.69 16 7 C 0.01 0.19 10.53 30.43 0.32 0.51 16 8 C -0.22 -4.51 6.31 -102.90 -0.65 -5.16 16 9 C 0.57 12.40 7.61 -12.56 -0.10 12.30 16 10 O -0.57 -13.06 15.41 5.25 0.08 -12.98 16 11 N -0.46 -9.65 2.02 -119.19 -0.24 -9.89 16 12 C -0.37 -7.99 6.89 -14.98 -0.10 -8.09 16 13 H 0.11 2.55 6.35 -52.49 -0.33 2.22 16 14 C 0.07 1.59 5.44 -17.46 -0.09 1.50 16 15 N -0.85 -19.57 13.96 55.50 0.77 -18.79 16 16 Si 0.87 16.70 24.81 -169.99 -4.22 12.48 16 17 H -0.26 -4.80 6.73 56.52 0.38 -4.42 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.25 -4.77 7.07 56.52 0.40 -4.37 16 20 C 0.19 3.61 4.53 -6.83 -0.03 3.58 16 21 C 0.22 4.34 15.77 -20.66 -0.33 4.01 16 22 N -0.45 -9.61 18.56 42.27 0.78 -8.83 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.45 7.23 -51.93 -0.38 1.08 16 28 H 0.26 4.67 5.29 -52.49 -0.28 4.39 16 29 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 30 H 0.11 1.91 3.51 -51.93 -0.18 1.73 16 31 H 0.12 2.00 7.50 -51.93 -0.39 1.61 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -27.02 281.64 -0.95 -27.97 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.41 Total: 4.10 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -0.22 Total: 13.31 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 1.74 Total: -43.85 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.09 Total: -18.25 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -4.22 Total: 12.48 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.02 -0.95 -27.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324087610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -27.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds