Wall clock time and date at job start Mon Mar 30 2020 00:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46896 * 2 1 4 4 C 1.50697 * 109.46991 * 239.99941 * 2 1 3 5 5 H 1.07996 * 119.99948 * 241.23619 * 4 2 1 6 6 C 1.37882 * 120.00073 * 61.24917 * 4 2 1 7 7 N 1.31516 * 119.99533 * 194.10798 * 6 4 2 8 8 Si 1.86801 * 119.99958 * 14.10269 * 6 4 2 9 9 H 1.48499 * 109.46768 * 84.54124 * 8 6 4 10 10 H 1.48500 * 109.46851 * 204.53822 * 8 6 4 11 11 H 1.48494 * 109.47122 * 324.54039 * 8 6 4 12 12 C 1.53000 * 109.46618 * 120.00087 * 2 1 3 13 13 N 1.46900 * 109.47181 * 299.99942 * 12 2 1 14 14 C 1.46900 * 110.99722 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.46749 * 180.02562 * 14 13 12 16 16 N 1.28710 * 124.72807 * 90.00409 * 15 14 13 17 17 C 1.33530 * 115.75607 * 179.97438 * 16 15 14 18 18 C 1.43203 * 123.13170 * 179.97438 * 17 16 15 19 19 N 8.67937 * 65.60614 * 87.84508 * 2 1 3 20 20 C 1.35180 * 113.73174 * 0.23104 * 17 16 15 21 21 S 1.70770 * 124.72666 * 269.95590 * 15 14 13 22 22 H 1.08996 * 109.47291 * 309.52009 * 1 2 3 23 23 H 1.09008 * 109.46637 * 69.51962 * 1 2 3 24 24 H 1.09001 * 109.47163 * 189.50939 * 1 2 3 25 25 H 1.09003 * 109.46653 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47396 * 300.00101 * 3 2 1 27 27 H 1.08998 * 109.46862 * 60.00268 * 3 2 1 28 28 H 0.97006 * 119.99538 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46701 * 180.02562 * 12 2 1 30 30 H 1.08996 * 109.47108 * 60.00333 * 12 2 1 31 31 H 1.00899 * 111.00042 * 56.05394 * 13 12 2 32 32 H 1.09001 * 109.47358 * 60.00202 * 14 13 12 33 33 H 1.08994 * 109.47140 * 300.00068 * 14 13 12 34 34 H 1.08004 * 125.57697 * 179.76588 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6366 -1.6000 -1.1315 6 6 1.7206 -0.2245 -2.4826 7 7 1.9118 -0.9751 -3.5455 8 14 1.0266 1.4997 -2.6692 9 1 2.1413 2.4799 -2.7118 10 1 0.2443 1.5847 -3.9286 11 1 0.1427 1.8050 -1.5157 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0288 2.4487 14 6 2.0217 -0.6947 3.6703 15 6 1.5000 0.0419 4.8771 16 7 0.3829 -0.2110 5.4642 17 6 0.0965 0.5536 6.5207 18 6 -1.1032 0.4092 7.2893 19 7 -2.0546 0.2972 7.8990 20 6 1.0419 1.4804 6.7938 21 16 2.3091 1.3278 5.6568 22 1 -0.3633 0.6539 0.7927 23 1 -0.3633 0.3596 -0.9628 24 1 -0.3633 -1.0135 0.1698 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6922 -0.6334 -4.4264 29 1 3.1299 -0.7209 1.2495 30 1 1.6766 -1.7489 1.2492 31 1 0.5437 0.0412 2.4402 32 1 3.1115 -0.6941 3.6870 33 1 1.6585 -1.7222 3.6872 34 1 1.0038 2.1983 7.5998 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658102880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:55 Heat of formation + Delta-G solvation = 90.980540 kcal Electronic energy + Delta-G solvation = -17144.239028 eV Core-core repulsion = 14398.004567 eV Total energy + Delta-G solvation = -2746.234461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32111 -37.45522 -36.63405 -34.44684 -31.86171 -30.81542 -27.55243 -26.22858 -25.56580 -25.03760 -23.48812 -20.91768 -19.56081 -18.78793 -17.33895 -16.15572 -15.76883 -15.50045 -15.25871 -15.05470 -14.07241 -13.68572 -13.53127 -13.31113 -13.04066 -12.92162 -12.79092 -12.59237 -12.06615 -11.98605 -11.94546 -11.86115 -11.03014 -10.35254 -10.21037 -10.06581 -10.05352 -9.94812 -9.88999 -9.18805 -8.99364 -8.59287 -8.39195 -8.10943 -6.10311 -4.06485 0.16232 0.93141 1.33166 1.66802 2.28714 3.20856 3.31483 3.39186 3.40632 3.44894 4.15423 4.42463 4.64522 4.76053 4.82183 5.16233 5.22951 5.48759 5.61167 5.89508 6.05724 6.26381 6.41752 6.59332 6.63551 6.78032 6.89669 6.97380 7.06683 7.22935 7.27191 7.33785 7.51215 7.64651 7.86631 8.51214 8.94013 9.55663 11.02918 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.004139 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.207227 B = 6762.894424 C = 6928.510642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.136 4.136 4 C -0.514 4.514 5 H 0.072 0.928 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.287 1.287 10 H -0.308 1.308 11 H -0.248 1.248 12 C 0.085 3.915 13 N -0.686 5.686 14 C 0.129 3.871 15 C 0.047 3.953 16 N -0.441 5.441 17 C 0.123 3.877 18 C 0.293 3.707 19 N -0.399 5.399 20 C -0.255 4.255 21 S 0.271 5.729 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.345 0.655 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 5.593 18.869 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 C -0.193 4.193 4 C -0.552 4.552 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.720 3.280 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.043 4.043 13 N -0.319 5.319 14 C -0.004 4.004 15 C -0.233 4.233 16 N -0.156 5.156 17 C -0.014 4.014 18 C -0.026 4.026 19 N -0.076 5.076 20 C -0.400 4.400 21 S 0.529 5.471 22 H 0.045 0.955 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.280 5.903 19.198 20.214 hybrid contribution -1.456 0.074 -0.003 1.458 sum 0.823 5.977 19.195 20.121 Atomic orbital electron populations 1.22312 0.98509 0.99270 1.00172 1.18467 0.91894 0.92624 0.93014 1.22173 1.00438 0.98078 0.98568 1.20836 1.33743 1.12154 0.88456 0.90994 1.24980 0.94697 0.97329 0.95832 1.69966 1.48630 1.35964 0.98736 0.87260 0.79370 0.85547 0.75778 1.21455 1.23754 1.17421 1.22022 0.99666 0.94861 0.87793 1.60734 1.17274 1.53367 1.00538 1.20549 1.00211 0.94936 0.84674 1.27191 0.93824 1.00122 1.02143 1.66908 1.16343 1.25830 1.06496 1.15592 0.92559 0.97479 0.95787 1.24231 0.91631 0.93766 0.92971 1.81242 1.09524 1.07286 1.09553 1.26625 1.00077 1.05417 1.07890 1.83094 1.18600 1.28512 1.16872 0.95453 0.92739 0.94071 0.93489 0.95128 0.93839 0.92707 0.91275 0.95303 0.83577 0.88466 0.91862 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.24 37.16 0.27 -2.73 16 2 C 0.04 0.88 0.57 -155.66 -0.09 0.79 16 3 C -0.14 -2.80 7.54 37.16 0.28 -2.52 16 4 C -0.51 -13.60 8.62 -34.44 -0.30 -13.90 16 5 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 6 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 8 Si 0.89 21.54 22.79 -169.99 -3.87 17.67 16 9 H -0.29 -6.93 7.10 56.52 0.40 -6.53 16 10 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.25 -5.59 4.65 56.52 0.26 -5.32 16 12 C 0.08 1.49 4.57 -3.82 -0.02 1.47 16 13 N -0.69 -9.88 5.71 -115.06 -0.66 -10.54 16 14 C 0.13 1.46 6.26 -4.98 -0.03 1.43 16 15 C 0.05 0.50 6.86 -13.59 -0.09 0.41 16 16 N -0.44 -5.45 10.67 -9.65 -0.10 -5.55 16 17 C 0.12 1.33 6.55 -86.29 -0.57 0.76 16 18 C 0.29 3.55 15.74 -22.49 -0.35 3.20 16 19 N -0.40 -5.49 18.53 41.82 0.78 -4.71 16 20 C -0.25 -1.96 10.89 29.64 0.32 -1.63 16 21 S 0.27 2.05 22.92 -107.50 -2.46 -0.41 16 22 H 0.03 0.49 7.06 -51.93 -0.37 0.13 16 23 H 0.05 1.22 4.30 -51.92 -0.22 0.99 16 24 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.67 2.26 -51.93 -0.12 0.56 16 27 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.35 5.20 6.99 -39.29 -0.27 4.92 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -30.41 294.98 -5.80 -36.21 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.03 Total: -0.30 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.67 Total: -10.77 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.79 Total: -46.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -3.87 Total: 17.67 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.46 Total: -0.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.41 -5.80 -36.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658102880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.191 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds