Wall clock time and date at job start Mon Mar 30 2020 00:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46896 * 2 1 4 4 C 1.50697 * 109.46991 * 239.99941 * 2 1 3 5 5 H 1.07996 * 119.99948 * 241.23619 * 4 2 1 6 6 C 1.37882 * 120.00073 * 61.24917 * 4 2 1 7 7 N 1.31516 * 119.99533 * 194.10798 * 6 4 2 8 8 Si 1.86801 * 119.99958 * 14.10269 * 6 4 2 9 9 H 1.48499 * 109.46768 * 84.54124 * 8 6 4 10 10 H 1.48500 * 109.46851 * 204.53822 * 8 6 4 11 11 H 1.48494 * 109.47122 * 324.54039 * 8 6 4 12 12 C 1.53000 * 109.46618 * 120.00087 * 2 1 3 13 13 N 1.46900 * 109.47181 * 299.99942 * 12 2 1 14 14 C 1.46900 * 110.99722 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.46749 * 180.02562 * 14 13 12 16 16 N 1.28710 * 124.72807 * 90.00409 * 15 14 13 17 17 C 1.33530 * 115.75607 * 179.97438 * 16 15 14 18 18 C 1.43203 * 123.13170 * 179.97438 * 17 16 15 19 19 N 8.67937 * 65.60614 * 87.84508 * 2 1 3 20 20 C 1.35180 * 113.73174 * 0.23104 * 17 16 15 21 21 S 1.70770 * 124.72666 * 269.95590 * 15 14 13 22 22 H 1.08996 * 109.47291 * 309.52009 * 1 2 3 23 23 H 1.09008 * 109.46637 * 69.51962 * 1 2 3 24 24 H 1.09001 * 109.47163 * 189.50939 * 1 2 3 25 25 H 1.09003 * 109.46653 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47396 * 300.00101 * 3 2 1 27 27 H 1.08998 * 109.46862 * 60.00268 * 3 2 1 28 28 H 0.97006 * 119.99538 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46701 * 180.02562 * 12 2 1 30 30 H 1.08996 * 109.47108 * 60.00333 * 12 2 1 31 31 H 1.00899 * 111.00042 * 56.05394 * 13 12 2 32 32 H 1.09001 * 109.47358 * 60.00202 * 14 13 12 33 33 H 1.08994 * 109.47140 * 300.00068 * 14 13 12 34 34 H 1.08004 * 125.57697 * 179.76588 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6366 -1.6000 -1.1315 6 6 1.7206 -0.2245 -2.4826 7 7 1.9118 -0.9751 -3.5455 8 14 1.0266 1.4997 -2.6692 9 1 2.1413 2.4799 -2.7118 10 1 0.2443 1.5847 -3.9286 11 1 0.1427 1.8050 -1.5157 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0288 2.4487 14 6 2.0217 -0.6947 3.6703 15 6 1.5000 0.0419 4.8771 16 7 0.3829 -0.2110 5.4642 17 6 0.0965 0.5536 6.5207 18 6 -1.1032 0.4092 7.2893 19 7 -2.0546 0.2972 7.8990 20 6 1.0419 1.4804 6.7938 21 16 2.3091 1.3278 5.6568 22 1 -0.3633 0.6539 0.7927 23 1 -0.3633 0.3596 -0.9628 24 1 -0.3633 -1.0135 0.1698 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6922 -0.6334 -4.4264 29 1 3.1299 -0.7209 1.2495 30 1 1.6766 -1.7489 1.2492 31 1 0.5437 0.0412 2.4402 32 1 3.1115 -0.6941 3.6870 33 1 1.6585 -1.7222 3.6872 34 1 1.0038 2.1983 7.5998 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658102880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:55 Heat of formation + Delta-G solvation = 68.649520 kcal Electronic energy + Delta-G solvation = -17145.207374 eV Core-core repulsion = 14398.004567 eV Total energy + Delta-G solvation = -2747.202807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08338 -38.91300 -37.61262 -35.78824 -33.71252 -31.83986 -28.54240 -27.87429 -27.02523 -26.42653 -24.82861 -21.74783 -20.62036 -20.18742 -18.07529 -18.01314 -17.37090 -16.58483 -16.38427 -15.99821 -15.23341 -14.92391 -14.78569 -14.55728 -14.44898 -14.15518 -14.07089 -13.80920 -13.64887 -13.60222 -13.10615 -12.63691 -12.49130 -12.27342 -11.89361 -11.84134 -11.57457 -10.91650 -10.82147 -10.67011 -10.52451 -10.28080 -9.87310 -9.30154 -8.25300 -6.23733 -0.51060 0.29029 0.63759 0.83704 1.39946 1.40458 1.42993 1.53330 2.35804 2.39832 2.61047 3.12249 3.27922 3.64727 4.04153 4.20008 4.27486 4.43855 4.48864 4.62753 4.67510 4.82594 4.92392 4.96745 5.01869 5.15631 5.27052 5.36436 5.64090 5.79517 5.89455 6.09969 6.21309 6.34486 6.46247 6.54530 6.83396 7.41885 8.91689 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.004139 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.207227 B = 6762.894424 C = 6928.510642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 C -0.131 4.131 4 C -0.510 4.510 5 H 0.033 0.967 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.283 1.283 10 H -0.321 1.321 11 H -0.215 1.215 12 C 0.098 3.902 13 N -0.679 5.679 14 C 0.130 3.870 15 C 0.016 3.984 16 N -0.470 5.470 17 C 0.089 3.911 18 C 0.310 3.690 19 N -0.441 5.441 20 C -0.230 4.230 21 S 0.350 5.650 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.342 0.658 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 8.089 21.293 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 C -0.188 4.188 4 C -0.548 4.548 5 H 0.052 0.948 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.252 1.252 11 H -0.139 1.139 12 C -0.031 4.031 13 N -0.311 5.311 14 C -0.002 4.002 15 C -0.263 4.263 16 N -0.186 5.186 17 C -0.047 4.047 18 C -0.008 4.008 19 N -0.118 5.118 20 C -0.376 4.376 21 S 0.608 5.392 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.836 8.401 21.663 23.407 hybrid contribution -1.497 -0.751 -0.674 1.805 sum 1.339 7.650 20.989 22.380 Atomic orbital electron populations 1.22229 0.97675 0.99863 1.00214 1.18480 0.92490 0.93348 0.92368 1.22093 1.00536 0.96948 0.99222 1.21231 1.32010 1.10892 0.90678 0.94835 1.25789 0.95648 1.01061 0.95597 1.70118 1.51416 1.38086 0.99324 0.86366 0.79264 0.80876 0.76141 1.21004 1.25152 1.13910 1.21676 0.99593 0.93927 0.87909 1.60641 1.16984 1.53051 1.00472 1.20560 1.01313 0.94579 0.83722 1.26966 0.94505 1.02149 1.02635 1.66817 1.17547 1.26950 1.07292 1.15576 0.93152 0.99378 0.96566 1.24494 0.91488 0.92589 0.92214 1.81248 1.10743 1.08757 1.11095 1.27102 0.98711 1.03935 1.07813 1.82876 1.16432 1.25198 1.14672 0.92354 0.94512 0.94391 0.93473 0.96425 0.90873 0.92977 0.91110 0.96567 0.83899 0.86428 0.92602 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 7.24 71.98 0.52 -5.08 16 2 C 0.03 1.41 0.57 -52.93 -0.03 1.38 16 3 C -0.13 -4.99 7.54 71.98 0.54 -4.45 16 4 C -0.51 -27.38 8.62 25.60 0.22 -27.16 16 5 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 6 C 0.02 0.90 5.32 84.66 0.45 1.35 16 7 N -0.95 -58.81 13.96 21.45 0.30 -58.52 16 8 Si 0.94 44.20 22.79 68.60 1.56 45.76 16 9 H -0.28 -12.93 7.10 99.48 0.71 -12.23 16 10 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 11 H -0.22 -8.89 4.65 99.48 0.46 -8.43 16 12 C 0.10 3.30 4.57 86.30 0.39 3.69 16 13 N -0.68 -17.70 5.71 -517.95 -2.96 -20.66 16 14 C 0.13 2.63 6.26 85.56 0.54 3.17 16 15 C 0.02 0.30 6.86 88.57 0.61 0.91 16 16 N -0.47 -10.69 10.67 -184.44 -1.97 -12.66 16 17 C 0.09 1.72 6.55 39.43 0.26 1.98 16 18 C 0.31 7.16 15.74 88.34 1.39 8.55 16 19 N -0.44 -11.92 18.53 19.00 0.35 -11.57 16 20 C -0.23 -2.59 10.89 67.11 0.73 -1.85 16 21 S 0.35 3.73 22.92 -56.49 -1.29 2.44 16 22 H 0.06 1.92 7.06 -2.39 -0.02 1.91 16 23 H 0.04 1.56 4.30 -2.38 -0.01 1.55 16 24 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 0.71 2.26 -2.39 -0.01 0.71 16 27 H 0.07 2.35 7.60 -2.39 -0.02 2.33 16 28 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.34 9.35 6.99 -89.69 -0.63 8.72 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -68.36 294.98 1.88 -66.48 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.26 Total: 6.24 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 5.62 Total: -17.51 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.27 Total: -103.40 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.56 Total: 45.76 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.29 Total: 2.44 kcal Total: -68.36 1.88 -66.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658102880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.127 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds