Wall clock time and date at job start Mon Mar 30 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47284 * 2 1 4 4 H 1.09001 * 109.47502 * 304.99849 * 3 2 1 5 5 C 1.50707 * 109.47015 * 185.00066 * 3 2 1 6 6 H 1.07997 * 119.99907 * 239.99944 * 5 3 2 7 7 C 1.37875 * 120.00076 * 60.00188 * 5 3 2 8 8 N 1.31519 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00000 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47227 * 59.99687 * 9 7 5 11 11 H 1.48501 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46859 * 299.99497 * 9 7 5 13 13 N 1.46501 * 109.47245 * 65.00226 * 3 2 1 14 14 C 1.34772 * 119.99862 * 274.99962 * 13 3 2 15 15 O 1.21628 * 120.00120 * 359.97438 * 14 13 3 16 16 C 1.47295 * 120.00080 * 179.97438 * 14 13 3 17 17 C 1.39836 * 120.13622 * 359.97438 * 16 14 13 18 18 C 1.36554 * 120.08766 * 179.69883 * 17 16 14 19 19 C 1.39165 * 120.37105 * 0.27956 * 18 17 16 20 20 O 1.35718 * 119.86496 * 180.02562 * 19 18 17 21 21 C 1.38702 * 120.27468 * 359.97236 * 19 18 17 22 22 C 1.38481 * 119.90389 * 0.02611 * 21 19 18 23 23 O 1.35659 * 120.18253 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47050 * 300.00229 * 1 2 3 26 26 H 1.09002 * 109.46814 * 59.99716 * 1 2 3 27 27 H 1.09003 * 109.47050 * 239.99771 * 2 1 3 28 28 H 1.09002 * 109.46814 * 120.00284 * 2 1 3 29 29 H 0.97001 * 119.99963 * 180.02562 * 8 7 5 30 30 H 0.96994 * 119.99934 * 94.99878 * 13 3 2 31 31 H 1.08002 * 119.95829 * 359.97438 * 17 16 14 32 32 H 1.08003 * 119.81375 * 180.29809 * 18 17 16 33 33 H 0.96697 * 114.00255 * 89.99214 * 20 19 18 34 34 H 1.08002 * 120.05026 * 180.02562 * 21 19 18 35 35 H 0.96697 * 114.00398 * 89.99832 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3811 10 1 6.5967 0.1450 -0.2343 11 1 6.3978 0.2154 -2.6498 12 1 6.5005 2.2797 -1.3808 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3414 2.6326 0.4315 16 6 0.0454 3.3224 2.6258 17 6 0.9359 3.3601 3.7033 18 6 0.5757 3.9759 4.8678 19 6 -0.6791 4.5643 4.9936 20 8 -1.0261 5.1740 6.1555 21 6 -1.5762 4.5313 3.9363 22 6 -1.2228 3.9099 2.7502 23 8 -2.0960 3.8739 1.7127 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0620 -2.9496 30 1 2.2720 2.1230 1.9977 31 1 1.9114 2.9056 3.6130 32 1 1.2687 4.0066 5.6955 33 1 -0.7993 6.1133 6.1898 34 1 -2.5489 4.9895 4.0378 35 1 -2.0218 4.6262 1.1098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:01 Heat of formation + Delta-G solvation = -99.086111 kcal Electronic energy + Delta-G solvation = -20030.978928 eV Core-core repulsion = 16801.456937 eV Total energy + Delta-G solvation = -3229.521992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36731 -38.72031 -37.59666 -35.79276 -34.94750 -32.42451 -31.22757 -30.23169 -29.42434 -26.88441 -23.75339 -23.00703 -22.44964 -20.50277 -19.42421 -19.04737 -17.80419 -17.09167 -16.38184 -15.95780 -15.57963 -15.11840 -14.68365 -14.47241 -14.14650 -14.00489 -13.30770 -12.96640 -12.65151 -12.41956 -12.24889 -11.72757 -11.43857 -11.24007 -10.99814 -10.86194 -10.82013 -10.69347 -10.32028 -10.15430 -9.60597 -9.06588 -9.02345 -8.97186 -8.59306 -8.49537 -7.79454 -6.12641 -4.22460 0.75904 1.16859 3.06096 3.24681 3.30321 3.31084 3.80898 4.02344 4.11801 4.36466 4.37586 4.73715 4.94342 5.18271 5.21961 5.41272 5.55352 5.74740 6.08920 6.21607 6.26492 6.43459 6.47702 6.51039 6.70599 7.08469 7.23024 7.37916 7.38820 7.45613 7.62182 7.73540 7.79161 7.90339 8.18510 8.65784 8.77199 9.12812 9.44934 10.92568 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.005006 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.736603 B = 5592.318516 C = 6262.985572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.704 5.704 14 C 0.541 3.459 15 O -0.530 6.530 16 C -0.162 4.162 17 C -0.057 4.057 18 C -0.164 4.164 19 C 0.135 3.865 20 O -0.498 6.498 21 C -0.186 4.186 22 C 0.180 3.820 23 O -0.473 6.473 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.392 0.608 34 H 0.138 0.862 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 9.235 12.543 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.326 3.674 15 O -0.408 6.408 16 C -0.166 4.166 17 C -0.076 4.076 18 C -0.182 4.182 19 C 0.090 3.910 20 O -0.308 6.308 21 C -0.205 4.205 22 C 0.133 3.867 23 O -0.284 6.284 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.033 8.012 12.032 15.664 hybrid contribution 1.608 0.831 0.038 1.811 sum -4.424 8.843 12.070 15.603 Atomic orbital electron populations 1.21839 0.98214 0.98064 1.01357 1.21940 0.92707 0.99736 1.02252 1.18798 0.94163 0.89220 0.80828 0.93198 1.21184 0.90675 1.39226 1.06321 0.92190 1.24878 0.98569 0.94774 0.95372 1.69888 1.35217 1.37420 1.09340 0.86519 0.84879 0.78280 0.77472 1.20172 1.21122 1.20211 1.46463 1.14333 1.55840 1.18566 1.17855 0.83057 0.79813 0.86646 1.90785 1.50994 1.59452 1.39592 1.20907 0.94771 1.04238 0.96644 1.20953 0.99130 0.95959 0.91555 1.21080 0.96316 1.02085 0.98734 1.18407 0.91940 0.95867 0.84785 1.84769 1.84026 1.27863 1.34185 1.21668 1.01514 1.04210 0.93131 1.18279 0.87005 0.93240 0.88183 1.84750 1.55932 1.50148 1.37573 0.95897 0.94182 0.93124 0.88272 0.95075 0.92488 0.78101 0.84525 0.84833 0.75127 0.84461 0.74647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.58 4.97 -56.05 -0.28 -14.86 16 14 C 0.54 10.94 6.32 -12.58 -0.08 10.86 16 15 O -0.53 -12.29 12.29 -16.65 -0.20 -12.50 16 16 C -0.16 -2.61 5.89 -104.83 -0.62 -3.23 16 17 C -0.06 -0.74 9.48 -39.59 -0.38 -1.12 16 18 C -0.16 -1.83 9.91 -39.85 -0.39 -2.22 16 19 C 0.13 1.52 6.70 -39.07 -0.26 1.25 16 20 O -0.50 -4.61 13.48 -18.86 -0.25 -4.86 16 21 C -0.19 -2.27 9.92 -39.32 -0.39 -2.66 16 22 C 0.18 2.67 6.72 -38.71 -0.26 2.41 16 23 O -0.47 -7.28 11.57 -40.58 -0.47 -7.75 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.92 5.65 -51.93 -0.29 0.62 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 6.91 6.55 -40.82 -0.27 6.64 16 31 H 0.14 1.58 6.39 -52.49 -0.34 1.24 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.39 1.58 9.06 45.56 0.41 2.00 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.40 4.50 9.06 45.56 0.41 4.91 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -32.54 296.16 -6.31 -38.85 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -2.41 Total: 11.97 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.76 Total: -6.76 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.35 Total: -38.74 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.93 Total: -25.11 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.54 -6.31 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.238 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds