Wall clock time and date at job start Mon Mar 30 2020 00:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47709 * 2 1 4 4 H 1.09001 * 109.47059 * 54.99886 * 3 2 1 5 5 C 1.50699 * 109.47413 * 175.00110 * 3 2 1 6 6 H 1.07999 * 119.99916 * 119.99747 * 5 3 2 7 7 C 1.37877 * 119.99982 * 300.00193 * 5 3 2 8 8 N 1.31517 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00019 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47195 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47433 * 119.99708 * 9 7 5 12 12 H 1.48503 * 109.47108 * 239.99671 * 9 7 5 13 13 N 1.46499 * 109.46946 * 295.00043 * 3 2 1 14 14 C 1.34781 * 119.99825 * 84.99484 * 13 3 2 15 15 O 1.21583 * 120.00066 * 0.02562 * 14 13 3 16 16 C 1.47549 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.39804 * 120.16926 * 359.97438 * 16 14 13 18 18 C 1.37746 * 120.00279 * 180.02562 * 17 16 14 19 19 C 1.38544 * 120.34372 * 359.95289 * 18 17 16 20 20 C 1.38430 * 120.33647 * 0.04806 * 19 18 17 21 21 O 1.35995 * 120.00405 * 180.25436 * 20 19 18 22 22 C 1.39185 * 119.98961 * 359.97278 * 20 19 18 23 23 O 1.35749 * 120.16733 * 179.97438 * 22 20 19 24 24 H 1.08997 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46938 * 300.00130 * 1 2 3 26 26 H 1.09003 * 109.47278 * 59.99659 * 1 2 3 27 27 H 1.09000 * 109.46784 * 239.99424 * 2 1 3 28 28 H 1.09003 * 109.47278 * 120.00341 * 2 1 3 29 29 H 0.97002 * 119.99684 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00501 * 265.00300 * 13 3 2 31 31 H 1.08002 * 119.99405 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.82680 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.82947 * 180.02562 * 19 18 17 34 34 H 0.96697 * 114.00113 * 269.71780 * 21 20 19 35 35 H 0.96689 * 113.99792 * 90.00308 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3817 10 1 6.5988 1.5460 0.1941 11 1 6.3991 1.6164 2.6101 12 1 6.4970 -0.5178 1.4629 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4318 16 6 0.0452 3.3245 -2.6275 17 6 0.9357 3.3645 -3.7045 18 6 0.5682 3.9822 -4.8796 19 6 -0.6826 4.5653 -5.0024 20 6 -1.5754 4.5340 -3.9450 21 8 -2.8033 5.1039 -4.0746 22 6 -1.2184 3.9139 -2.7511 23 8 -2.0910 3.8816 -1.7117 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0606 2.9502 30 1 2.2720 2.1230 -1.9979 31 1 1.9118 2.9110 -3.6151 32 1 1.2585 4.0117 -5.7096 33 1 -0.9622 5.0470 -5.9276 34 1 -2.8351 6.0339 -3.8115 35 1 -2.6713 3.1082 -1.7094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126132271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:02 Heat of formation + Delta-G solvation = -123.710588 kcal Electronic energy + Delta-G solvation = -20146.725219 eV Core-core repulsion = 16916.135430 eV Total energy + Delta-G solvation = -3230.589789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56047 -40.08093 -37.87908 -37.44417 -36.78309 -34.31964 -33.04993 -31.35182 -30.19814 -28.87139 -25.51017 -24.53935 -23.42303 -22.11979 -21.18443 -19.97721 -19.13208 -18.57161 -17.51490 -17.37693 -16.79559 -16.66099 -16.20558 -16.00874 -15.79766 -14.96997 -14.79276 -14.59228 -13.96953 -13.55968 -13.49547 -13.26723 -13.18276 -12.91009 -12.85999 -12.69786 -12.22603 -12.16004 -12.06134 -11.60645 -11.46967 -11.04344 -10.60446 -10.48196 -9.97238 -9.60409 -9.56213 -8.16089 -6.33626 -0.22472 0.12943 1.44669 1.45805 1.57605 1.95090 2.33303 2.55752 2.71025 3.10911 3.14045 3.39117 3.82783 3.99376 4.16129 4.37617 4.48058 4.55919 4.66237 4.73271 4.76685 5.05594 5.15200 5.21688 5.27050 5.33236 5.42941 5.55282 5.61447 5.66574 5.79213 5.93020 6.16186 6.61803 6.74110 6.85691 6.97519 7.33226 7.56036 8.89693 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.005038 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.655627 B = 5556.514077 C = 6129.134161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.699 5.699 14 C 0.537 3.463 15 O -0.569 6.569 16 C -0.168 4.168 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.099 4.099 20 C 0.065 3.935 21 O -0.498 6.498 22 C 0.114 3.886 23 O -0.491 6.491 24 H 0.046 0.954 25 H 0.025 0.975 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.401 0.599 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.409 0.591 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 7.100 -17.067 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.349 5.349 14 C 0.325 3.675 15 O -0.450 6.450 16 C -0.171 4.171 17 C -0.102 4.102 18 C -0.125 4.125 19 C -0.118 4.118 20 C 0.020 3.980 21 O -0.310 6.310 22 C 0.067 3.933 23 O -0.303 6.303 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.187 0.813 34 H 0.267 0.733 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.690 6.946 -16.243 18.560 hybrid contribution 0.791 -0.151 0.715 1.077 sum -4.899 6.796 -15.528 17.644 Atomic orbital electron populations 1.21669 0.97061 0.99109 1.00145 1.21779 0.93714 0.99044 1.01378 1.18398 0.93823 0.89175 0.81113 0.98580 1.21595 0.91240 1.38908 1.06801 0.90927 1.25781 1.03394 0.94331 0.94966 1.70062 1.37049 1.38408 1.09866 0.85304 0.79006 0.77837 0.78216 1.18287 1.21157 1.20400 1.46185 1.15180 1.55882 1.17679 1.18554 0.82369 0.78843 0.87766 1.90746 1.52264 1.60642 1.41364 1.20521 0.96981 1.04182 0.95451 1.21593 0.99090 0.97555 0.91937 1.21400 0.96665 0.96652 0.97828 1.21875 0.92293 0.98633 0.98974 1.18822 0.86873 1.00779 0.91524 1.84756 1.26221 1.31707 1.88332 1.19246 0.89264 0.97852 0.86939 1.84667 1.50847 1.48949 1.45793 0.93505 0.95591 0.93972 0.93922 0.90910 0.92607 0.76267 0.83537 0.80774 0.81348 0.73279 0.74093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.00 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.47 2.24 44.24 0.10 14.57 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 5 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 13 N -0.70 -29.61 4.97 -449.26 -2.23 -31.84 16 14 C 0.54 22.57 6.33 86.70 0.55 23.12 16 15 O -0.57 -28.25 12.29 16.97 0.21 -28.05 16 16 C -0.17 -5.41 5.88 -20.02 -0.12 -5.53 16 17 C -0.08 -1.94 9.53 22.53 0.21 -1.72 16 18 C -0.11 -1.75 10.02 22.23 0.22 -1.53 16 19 C -0.10 -1.65 9.97 22.39 0.22 -1.43 16 20 C 0.07 1.50 6.71 22.54 0.15 1.65 16 21 O -0.50 -9.99 13.29 -79.61 -1.06 -11.05 16 22 C 0.11 3.48 6.73 22.92 0.15 3.64 16 23 O -0.49 -16.56 11.36 -63.39 -0.72 -17.28 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.02 1.28 7.84 -2.38 -0.02 1.26 16 26 H 0.04 1.87 5.65 -2.39 -0.01 1.85 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 4.04 5.95 -2.39 -0.01 4.03 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.40 14.20 6.57 -92.71 -0.61 13.59 16 31 H 0.15 2.97 6.40 -2.91 -0.02 2.95 16 32 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.41 4.77 9.06 -74.06 -0.67 4.10 16 35 H 0.40 11.28 9.06 -74.06 -0.67 10.61 16 Total: -1.00 -73.05 296.02 0.62 -72.43 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.79 Total: 29.71 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 2.95 Total: -5.51 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.99 Total: -84.17 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -1.57 Total: -56.38 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -73.05 0.62 -72.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126132271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.281 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds