Wall clock time and date at job start Mon Mar 30 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47430 * 2 1 4 4 H 1.08995 * 109.47427 * 305.00185 * 3 2 1 5 5 C 1.50701 * 109.47453 * 184.99866 * 3 2 1 6 6 H 1.08000 * 120.00061 * 240.00048 * 5 3 2 7 7 C 1.37881 * 119.99923 * 59.99774 * 5 3 2 8 8 N 1.31514 * 119.99961 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00093 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46993 * 60.00291 * 9 7 5 11 11 H 1.48494 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46722 * 300.00233 * 9 7 5 13 13 N 1.46499 * 109.47073 * 65.00012 * 3 2 1 14 14 C 1.34785 * 119.99948 * 275.00058 * 13 3 2 15 15 O 1.21584 * 119.99649 * 359.97438 * 14 13 3 16 16 C 1.47542 * 119.99974 * 179.97438 * 14 13 3 17 17 C 1.39811 * 120.16853 * 0.27427 * 16 14 13 18 18 C 1.37741 * 120.00386 * 180.27321 * 17 16 14 19 19 C 1.38543 * 120.34397 * 359.70551 * 18 17 16 20 20 C 1.38434 * 120.33645 * 0.02562 * 19 18 17 21 21 O 1.35991 * 120.00487 * 180.02562 * 20 19 18 22 22 C 1.39178 * 119.98568 * 359.97438 * 20 19 18 23 23 O 1.35744 * 120.16651 * 179.97438 * 22 20 19 24 24 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47295 * 300.00088 * 1 2 3 26 26 H 1.09000 * 109.46956 * 60.00063 * 1 2 3 27 27 H 1.09006 * 109.47497 * 239.99822 * 2 1 3 28 28 H 1.09000 * 109.47325 * 120.00334 * 2 1 3 29 29 H 0.96993 * 120.00136 * 179.97438 * 8 7 5 30 30 H 0.97005 * 120.00004 * 94.99972 * 13 3 2 31 31 H 1.08002 * 119.99688 * 359.97438 * 17 16 14 32 32 H 1.07999 * 119.82835 * 179.72673 * 18 17 16 33 33 H 1.07996 * 119.83564 * 180.02562 * 19 18 17 34 34 H 0.96702 * 114.00104 * 269.97668 * 21 20 19 35 35 H 0.96700 * 114.00347 * 89.99979 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5967 0.1450 -0.2343 11 1 6.3979 0.2165 -2.6503 12 1 6.5005 2.2798 -1.3807 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3411 2.6326 0.4317 16 6 0.0446 3.3235 2.6279 17 6 0.9367 3.3671 3.7035 18 6 0.5665 3.9784 4.8810 19 6 -0.6858 4.5578 5.0053 20 6 -1.5782 4.5278 3.9473 21 8 -2.8055 5.0990 4.0765 22 6 -1.2185 3.9137 2.7512 23 8 -2.0909 3.8817 1.7117 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0605 -2.9502 30 1 2.2720 2.1230 1.9978 31 1 1.9143 2.9171 3.6128 32 1 1.2562 4.0065 5.7116 33 1 -0.9673 5.0353 5.9321 34 1 -3.4859 4.4981 4.4097 35 1 -2.0192 4.6389 1.1145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126132525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:05 Heat of formation + Delta-G solvation = -98.909404 kcal Electronic energy + Delta-G solvation = -20142.990497 eV Core-core repulsion = 16913.476167 eV Total energy + Delta-G solvation = -3229.514329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38590 -38.64441 -36.75532 -36.43749 -34.94579 -32.46276 -31.31894 -30.03542 -29.20365 -26.95110 -24.01134 -22.90435 -22.36447 -20.54670 -19.42155 -18.71210 -18.03680 -17.02759 -16.27282 -15.80976 -15.58997 -15.11479 -14.91647 -14.44739 -14.19593 -13.91703 -13.29673 -12.69879 -12.52072 -12.34612 -12.24624 -11.81255 -11.45923 -11.27162 -11.23743 -10.99721 -10.82310 -10.40693 -10.28864 -10.15991 -9.61622 -9.06716 -8.97426 -8.88548 -8.60929 -8.49894 -7.80963 -6.12810 -4.22615 0.84041 1.07930 3.10200 3.24838 3.30461 3.31260 3.83075 3.99637 4.16145 4.37417 4.38398 4.81227 4.99679 5.12844 5.18399 5.38620 5.62755 5.72546 6.06935 6.21880 6.26093 6.41894 6.49277 6.52527 6.69188 7.06875 7.21868 7.37560 7.42554 7.44752 7.61731 7.73245 7.85453 7.89847 8.17791 8.64734 8.76780 9.11543 9.44706 10.92459 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.030362 B = 0.005034 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.976300 B = 5560.388735 C = 6127.174016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.540 3.460 15 O -0.527 6.527 16 C -0.138 4.138 17 C -0.082 4.082 18 C -0.123 4.123 19 C -0.117 4.117 20 C 0.065 3.935 21 O -0.492 6.492 22 C 0.139 3.861 23 O -0.470 6.470 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.390 0.610 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 6.309 13.690 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.325 3.675 15 O -0.405 6.405 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.136 4.136 20 C 0.020 3.980 21 O -0.301 6.301 22 C 0.092 3.908 23 O -0.280 6.280 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.246 0.754 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.731 6.141 12.804 15.715 hybrid contribution 1.198 -0.019 0.291 1.233 sum -5.533 6.122 13.095 15.478 Atomic orbital electron populations 1.21837 0.98236 0.98050 1.01346 1.21938 0.92682 0.99722 1.02264 1.18805 0.94204 0.89214 0.80807 0.93199 1.21181 0.90644 1.39224 1.06358 0.92170 1.24879 0.98587 0.94765 0.95360 1.69882 1.35235 1.37456 1.09299 0.86515 0.84854 0.78300 0.77463 1.20164 1.21123 1.20199 1.46466 1.14279 1.55767 1.18596 1.17897 0.83123 0.79867 0.86590 1.90779 1.51029 1.59221 1.39509 1.20803 0.94049 1.02818 0.96564 1.21391 0.99153 0.97486 0.92092 1.20957 0.96241 0.98952 0.97995 1.21444 0.94353 0.99582 0.98193 1.18766 0.87813 0.97993 0.93477 1.84797 1.17318 1.39707 1.88315 1.18904 0.88303 0.94729 0.88899 1.84701 1.56131 1.49541 1.37665 0.95890 0.94221 0.93118 0.88258 0.95064 0.92480 0.78049 0.84703 0.84925 0.84959 0.75430 0.74685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.80 2.24 -69.09 -0.15 6.64 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.58 4.97 -55.98 -0.28 -14.86 16 14 C 0.54 11.00 6.33 -12.46 -0.08 10.92 16 15 O -0.53 -12.36 12.29 -16.61 -0.20 -12.56 16 16 C -0.14 -2.26 5.88 -104.87 -0.62 -2.87 16 17 C -0.08 -1.06 9.53 -39.18 -0.37 -1.44 16 18 C -0.12 -1.29 10.02 -39.65 -0.40 -1.69 16 19 C -0.12 -1.24 9.97 -39.40 -0.39 -1.63 16 20 C 0.06 0.82 6.71 -39.16 -0.26 0.56 16 21 O -0.49 -5.51 13.29 -34.24 -0.45 -5.96 16 22 C 0.14 2.14 6.73 -38.58 -0.26 1.88 16 23 O -0.47 -7.61 11.36 -47.54 -0.54 -8.15 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.91 6.57 -40.82 -0.27 6.64 16 31 H 0.14 1.54 6.40 -52.49 -0.34 1.21 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.39 2.72 9.06 45.56 0.41 3.13 16 35 H 0.40 5.20 9.06 45.56 0.41 5.61 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -32.15 296.01 -6.59 -38.74 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -2.41 Total: 13.18 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.76 Total: -6.29 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.35 Total: -38.77 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.20 Total: -26.68 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.15 -6.59 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126132525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.174 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds