Wall clock time and date at job start Mon Mar 30 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46943 * 269.99415 * 3 2 1 5 5 H 1.48495 * 109.47413 * 29.99802 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99771 * 3 2 1 7 7 C 1.37880 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99290 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00309 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47092 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00372 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00012 * 0.02562 * 13 12 11 15 15 C 1.47551 * 120.00278 * 180.02562 * 13 12 11 16 16 C 1.39797 * 120.16298 * 0.21072 * 15 13 12 17 17 C 1.37750 * 119.99975 * 180.23046 * 16 15 13 18 18 C 1.38542 * 120.34525 * 359.79285 * 17 16 15 19 19 C 1.38434 * 120.33604 * 0.02562 * 18 17 16 20 20 O 1.35991 * 120.00487 * 180.02562 * 19 18 17 21 21 C 1.39178 * 119.98568 * 359.97438 * 19 18 17 22 22 O 1.35744 * 120.16651 * 179.97438 * 21 19 18 23 23 H 0.96996 * 120.00405 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47259 * 60.00064 * 9 7 2 25 25 H 1.09001 * 109.46507 * 299.99830 * 9 7 2 26 26 H 1.08994 * 109.47353 * 59.99696 * 10 9 7 27 27 H 1.09000 * 109.46471 * 299.99369 * 10 9 7 28 28 H 1.09003 * 109.47428 * 59.99442 * 11 10 9 29 29 H 1.09002 * 109.46835 * 299.99853 * 11 10 9 30 30 H 0.97005 * 119.99694 * 359.97438 * 12 11 10 31 31 H 1.08002 * 120.00152 * 359.97438 * 16 15 13 32 32 H 1.08006 * 119.82761 * 179.76759 * 17 16 15 33 33 H 1.07998 * 119.83451 * 179.97438 * 18 17 16 34 34 H 0.96702 * 114.00104 * 269.97668 * 20 19 18 35 35 H 0.96700 * 114.00347 * 89.99979 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0399 -4.0177 0.0014 13 6 7.3649 -4.2640 0.0010 14 8 8.1551 -3.3398 0.0006 15 6 7.8568 -5.6551 0.0009 16 6 6.9514 -6.7203 -0.0031 17 6 7.4143 -8.0177 0.0016 18 6 8.7756 -8.2751 0.0061 19 6 9.6846 -7.2311 0.0063 20 8 11.0193 -7.4915 0.0101 21 6 9.2322 -5.9149 0.0015 22 8 10.1204 -4.8883 0.0023 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1502 -0.8892 27 1 3.6579 -3.1504 0.8908 28 1 5.9149 -2.1227 0.8909 29 1 5.9148 -2.1227 -0.8891 30 1 5.4095 -4.7550 0.0021 31 1 5.8890 -6.5260 -0.0058 32 1 6.7123 -8.8385 0.0023 33 1 9.1294 -9.2955 0.0102 34 1 11.4032 -7.5648 0.8947 35 1 10.3809 -4.5929 -0.8809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126139679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:26 Heat of formation + Delta-G solvation = -105.398177 kcal Electronic energy + Delta-G solvation = -18993.041055 eV Core-core repulsion = 15763.245351 eV Total energy + Delta-G solvation = -3229.795704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79403 -39.10984 -37.09039 -36.77621 -35.48602 -33.36805 -31.78386 -30.69269 -29.55105 -27.24898 -24.38321 -23.00395 -22.41335 -20.86463 -20.23940 -18.90832 -18.38981 -17.13721 -16.74848 -16.52611 -15.96919 -15.42589 -15.34553 -15.22437 -14.35984 -14.20864 -13.93286 -13.62356 -12.92290 -12.72381 -12.69877 -12.38556 -12.00320 -11.92182 -11.59773 -11.10804 -10.91037 -10.77074 -10.18798 -9.98079 -9.79078 -9.56729 -9.31638 -9.24675 -8.95233 -8.85293 -8.57050 -6.07877 -4.06758 0.43622 0.74840 2.64148 3.15546 3.30437 3.38152 3.42232 3.42462 3.72650 4.03101 4.43220 4.46511 4.52948 4.73828 4.94484 5.25020 5.26283 5.32870 5.54072 5.62757 5.71455 5.83834 5.91770 5.98402 6.18933 6.30327 6.41616 6.65937 6.76067 7.15030 7.20534 7.34144 7.50517 7.56962 7.74648 8.26243 8.48503 8.95736 9.54376 11.05358 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.043459 B = 0.003261 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.130353 B = 8584.758276 C = 9197.882846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.115 3.885 12 N -0.721 5.721 13 C 0.551 3.449 14 O -0.524 6.524 15 C -0.147 4.147 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.109 4.109 19 C 0.068 3.932 20 O -0.490 6.490 21 C 0.143 3.857 22 O -0.471 6.471 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.393 0.607 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.349 -18.033 0.017 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.373 5.373 13 C 0.337 3.663 14 O -0.401 6.401 15 C -0.151 4.151 16 C -0.099 4.099 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.023 3.977 20 O -0.300 6.300 21 C 0.096 3.904 22 O -0.282 6.282 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.233 0.767 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.249 0.751 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 18.654 -17.229 0.011 25.393 hybrid contribution 0.077 0.544 0.003 0.549 sum 18.731 -16.685 0.015 25.084 Atomic orbital electron populations 1.69906 1.06328 1.26992 1.50971 1.25027 0.94746 0.99251 0.94437 0.86775 0.80419 0.83508 0.78602 1.20233 1.21357 1.18874 1.21093 0.89293 0.94515 1.51157 0.91004 1.19502 0.97280 0.91413 0.96708 1.21714 0.90531 1.01152 1.01766 1.21686 0.96182 0.80801 1.02119 1.46094 1.06334 1.10180 1.74676 1.18001 0.82790 0.87971 0.77514 1.90811 1.55144 1.45255 1.48930 1.20466 0.93315 0.94350 1.06991 1.21353 0.99638 0.91914 0.96953 1.21007 0.95094 0.96859 1.00911 1.21546 0.93040 0.99255 0.98960 1.18759 0.84219 0.90821 1.03902 1.84807 1.18259 1.93158 1.33810 1.18895 0.87630 0.86839 0.97078 1.84708 1.60524 1.49354 1.33602 0.92672 0.96260 0.96715 0.92076 0.92042 0.91591 0.91605 0.76697 0.84643 0.84515 0.84562 0.75103 0.74456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.89 5.67 -4.05 -0.02 1.87 16 12 N -0.72 -9.96 5.51 -61.35 -0.34 -10.30 16 13 C 0.55 8.24 7.76 -12.46 -0.10 8.15 16 14 O -0.52 -9.68 15.16 -16.62 -0.25 -9.93 16 15 C -0.15 -1.76 5.88 -104.87 -0.62 -2.38 16 16 C -0.08 -0.71 9.53 -39.18 -0.37 -1.08 16 17 C -0.12 -0.87 10.02 -39.65 -0.40 -1.26 16 18 C -0.11 -0.83 9.97 -39.40 -0.39 -1.22 16 19 C 0.07 0.65 6.71 -39.16 -0.26 0.39 16 20 O -0.49 -4.17 13.29 -34.24 -0.45 -4.63 16 21 C 0.14 1.68 6.73 -38.58 -0.26 1.42 16 22 O -0.47 -5.96 11.36 -47.54 -0.54 -6.50 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.40 4.34 6.50 -40.82 -0.27 4.07 16 31 H 0.14 0.93 6.40 -52.49 -0.34 0.59 16 32 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.39 1.71 9.06 45.56 0.41 2.13 16 35 H 0.40 3.78 9.06 45.56 0.41 4.19 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -35.47 304.99 -6.66 -42.12 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.66 Total: 4.35 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.11 Total: -9.84 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.44 Total: -37.19 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.25 Total: -21.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.47 -6.66 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126139679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.274 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds