Wall clock time and date at job start Mon Mar 30 2020 00:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47171 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00301 * 3 2 1 6 6 H 1.48511 * 109.47181 * 149.99930 * 3 2 1 7 7 C 1.38953 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00296 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99677 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00429 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99558 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47669 * 1.62876 * 12 10 9 14 14 C 1.52999 * 109.47067 * 121.63134 * 12 10 9 15 15 C 1.52999 * 109.47429 * 59.99586 * 14 12 10 16 16 C 1.52999 * 109.47195 * 60.00298 * 15 14 12 17 17 C 1.53003 * 109.47022 * 300.00070 * 16 15 14 18 18 C 1.52999 * 109.47193 * 59.99929 * 17 16 15 19 19 H 1.08996 * 109.47223 * 60.00035 * 18 17 16 20 20 C 1.52999 * 109.47429 * 180.02562 * 18 17 16 21 21 F 1.39897 * 109.47441 * 174.18195 * 20 18 17 22 22 F 1.39902 * 109.46705 * 294.17979 * 20 18 17 23 23 F 1.39901 * 109.47066 * 54.17667 * 20 18 17 24 24 H 0.96994 * 120.00030 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00282 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.47056 * 179.97438 * 14 12 10 27 27 H 1.09006 * 109.47300 * 299.99258 * 14 12 10 28 28 H 1.08998 * 109.47231 * 180.02562 * 15 14 12 29 29 H 1.08996 * 109.47223 * 300.00229 * 15 14 12 30 30 H 1.08994 * 109.47425 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47037 * 59.99756 * 16 15 14 32 32 H 1.08997 * 109.46763 * 300.00322 * 17 16 15 33 33 H 1.08998 * 109.46922 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0000 13 1 0.1723 -4.6640 -0.0296 14 6 1.6442 -5.6826 -1.2283 15 6 3.1479 -5.9619 -1.1868 16 6 3.4861 -6.7466 0.0823 17 6 3.0855 -5.9270 1.3107 18 6 1.5818 -5.6477 1.2692 19 1 1.0368 -6.5916 1.2688 20 6 1.1813 -4.8275 2.4971 21 9 -0.1643 -4.4593 2.3934 22 9 1.3669 -5.5956 3.6516 23 9 1.9753 -3.6779 2.5692 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 -0.0002 26 1 1.0995 -6.6268 -1.2285 27 1 1.4033 -5.1236 -2.1326 28 1 3.4334 -6.5455 -2.0621 29 1 3.6929 -5.0180 -1.1864 30 1 4.5572 -6.9460 0.1117 31 1 2.9410 -7.6906 0.0819 32 1 3.6305 -4.9831 1.3110 33 1 3.3260 -6.4862 2.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134480826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:30 Heat of formation + Delta-G solvation = -210.313610 kcal Electronic energy + Delta-G solvation = -22073.518009 eV Core-core repulsion = 18297.316091 eV Total energy + Delta-G solvation = -3776.201918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.62903 -47.18447 -46.97775 -39.61659 -36.47217 -33.82405 -31.72957 -31.27466 -30.45918 -25.76921 -24.80424 -22.68187 -21.61665 -20.52352 -18.83267 -17.96158 -17.75599 -17.69932 -16.97470 -15.88112 -14.91865 -14.52986 -14.31491 -14.01459 -13.85978 -13.80202 -13.54310 -13.44047 -13.19527 -13.11768 -12.85013 -12.53341 -12.01716 -11.86109 -11.76537 -11.44810 -11.39212 -11.09465 -10.82809 -10.50164 -10.31007 -10.20589 -9.99971 -9.90736 -9.43338 -8.06716 -7.93195 -6.40680 -3.80531 3.17357 3.19205 3.27218 3.32987 3.77159 4.16227 4.22817 4.39447 4.45986 4.83539 5.06156 5.14835 5.29502 5.39645 5.47010 5.49850 5.62352 5.71614 5.75033 5.89882 6.09769 6.14584 6.29793 6.40965 6.44139 6.52981 6.77581 7.03567 7.56592 8.06021 8.60893 9.18126 9.54364 10.04703 10.76664 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.007994 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.617994 B = 3501.613164 C = 4080.934258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.296 4.296 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.441 3.559 11 O -0.578 6.578 12 C -0.102 4.102 13 H 0.084 0.916 14 C -0.093 4.093 15 C -0.137 4.137 16 C -0.099 4.099 17 C -0.131 4.131 18 C -0.110 4.110 19 H 0.107 0.893 20 C 0.446 3.554 21 F -0.186 7.186 22 F -0.194 7.194 23 F -0.160 7.160 24 H 0.272 0.728 25 H 0.392 0.608 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 -11.891 1.063 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.122 0.878 9 N -0.185 5.185 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.124 4.124 13 H 0.102 0.898 14 C -0.131 4.131 15 C -0.174 4.174 16 C -0.137 4.137 17 C -0.168 4.168 18 C -0.130 4.130 19 H 0.125 0.875 20 C 0.392 3.608 21 F -0.167 7.167 22 F -0.175 7.175 23 F -0.141 7.141 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.227 -11.673 1.101 11.789 hybrid contribution -0.568 0.960 0.310 1.157 sum 0.659 -10.714 1.411 10.826 Atomic orbital electron populations 1.69615 1.05956 1.28188 1.50129 1.25274 0.95605 0.99763 0.97243 0.85878 0.79301 0.80910 0.78321 1.20444 1.20946 1.19388 1.19692 0.93343 0.82150 1.47393 0.87813 1.41943 1.09153 1.04662 1.62772 1.19480 0.88249 0.84333 0.85184 1.90344 1.13522 1.86371 1.56230 1.21176 1.00958 0.95760 0.94477 0.89777 1.21277 0.97268 0.98465 0.96086 1.21851 0.96327 1.03086 0.96178 1.21284 1.00551 0.97208 0.94610 1.21861 0.92376 1.04298 0.98248 1.22296 1.01360 0.98592 0.90774 0.87534 1.20721 0.74924 0.79882 0.85297 1.93160 1.34986 1.92391 1.96181 1.93123 1.95078 1.75603 1.53707 1.93303 1.73382 1.51129 1.96324 0.91842 0.77496 0.92066 0.91356 0.93098 0.87564 0.91946 0.93155 0.86775 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.83 5.28 -10.96 -0.06 -13.88 16 10 C 0.44 9.87 4.15 -10.98 -0.05 9.82 16 11 O -0.58 -14.10 10.86 5.55 0.06 -14.04 16 12 C -0.10 -1.75 2.44 -91.77 -0.22 -1.98 16 13 H 0.08 1.38 7.44 -51.93 -0.39 1.00 16 14 C -0.09 -1.38 5.44 -26.73 -0.15 -1.52 16 15 C -0.14 -2.07 5.63 -26.73 -0.15 -2.22 16 16 C -0.10 -1.35 5.92 -26.73 -0.16 -1.50 16 17 C -0.13 -2.04 4.65 -26.73 -0.12 -2.17 16 18 C -0.11 -1.73 2.06 -90.62 -0.19 -1.91 16 19 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 20 C 0.45 7.96 2.63 37.16 0.10 8.06 16 21 F -0.19 -3.39 16.57 2.25 0.04 -3.35 16 22 F -0.19 -3.20 17.03 2.25 0.04 -3.16 16 23 F -0.16 -3.47 14.33 2.25 0.03 -3.44 16 24 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.39 9.73 7.74 -40.82 -0.32 9.41 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.11 1.99 5.45 -51.93 -0.28 1.71 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 2.21 5.10 -51.93 -0.26 1.94 16 33 H 0.06 0.83 7.96 -51.93 -0.41 0.41 16 LS Contribution 274.10 15.07 4.13 4.13 Total: -1.00 -28.88 274.10 -4.95 -33.82 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.71 Total: 8.88 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.18 Total: -1.20 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.67 Total: -37.77 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.06 Total: -14.04 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 0.11 Total: -9.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.88 -4.95 -33.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134480826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.489 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds