Wall clock time and date at job start Mon Mar 30 2020 00:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47171 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00301 * 3 2 1 6 6 H 1.48511 * 109.47181 * 149.99930 * 3 2 1 7 7 C 1.38953 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00296 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99677 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00429 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99558 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47669 * 1.62876 * 12 10 9 14 14 C 1.52999 * 109.47067 * 121.63134 * 12 10 9 15 15 C 1.52999 * 109.47429 * 59.99586 * 14 12 10 16 16 C 1.52999 * 109.47195 * 60.00298 * 15 14 12 17 17 C 1.53003 * 109.47022 * 300.00070 * 16 15 14 18 18 C 1.52999 * 109.47193 * 59.99929 * 17 16 15 19 19 H 1.08996 * 109.47223 * 60.00035 * 18 17 16 20 20 C 1.52999 * 109.47429 * 180.02562 * 18 17 16 21 21 F 1.39897 * 109.47441 * 174.18195 * 20 18 17 22 22 F 1.39902 * 109.46705 * 294.17979 * 20 18 17 23 23 F 1.39901 * 109.47066 * 54.17667 * 20 18 17 24 24 H 0.96994 * 120.00030 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00282 * 0.02562 * 9 7 2 26 26 H 1.09005 * 109.47056 * 179.97438 * 14 12 10 27 27 H 1.09006 * 109.47300 * 299.99258 * 14 12 10 28 28 H 1.08998 * 109.47231 * 180.02562 * 15 14 12 29 29 H 1.08996 * 109.47223 * 300.00229 * 15 14 12 30 30 H 1.08994 * 109.47425 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47037 * 59.99756 * 16 15 14 32 32 H 1.08997 * 109.46763 * 300.00322 * 17 16 15 33 33 H 1.08998 * 109.46922 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0000 13 1 0.1723 -4.6640 -0.0296 14 6 1.6442 -5.6826 -1.2283 15 6 3.1479 -5.9619 -1.1868 16 6 3.4861 -6.7466 0.0823 17 6 3.0855 -5.9270 1.3107 18 6 1.5818 -5.6477 1.2692 19 1 1.0368 -6.5916 1.2688 20 6 1.1813 -4.8275 2.4971 21 9 -0.1643 -4.4593 2.3934 22 9 1.3669 -5.5956 3.6516 23 9 1.9753 -3.6779 2.5692 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 -0.0002 26 1 1.0995 -6.6268 -1.2285 27 1 1.4033 -5.1236 -2.1326 28 1 3.4334 -6.5455 -2.0621 29 1 3.6929 -5.0180 -1.1864 30 1 4.5572 -6.9460 0.1117 31 1 2.9410 -7.6906 0.0819 32 1 3.6305 -4.9831 1.3110 33 1 3.3260 -6.4862 2.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134480826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:30 Heat of formation + Delta-G solvation = -228.268933 kcal Electronic energy + Delta-G solvation = -22074.296610 eV Core-core repulsion = 18297.316091 eV Total energy + Delta-G solvation = -3776.980520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.07331 -48.57608 -48.51804 -41.15674 -38.06206 -35.76374 -33.40846 -32.69992 -31.85500 -27.44760 -26.43178 -24.07284 -22.93068 -21.90691 -20.53916 -19.69977 -19.24895 -19.18524 -18.43502 -17.55962 -16.42067 -16.34670 -15.88521 -15.47890 -15.42513 -15.25074 -14.97544 -14.74716 -14.71203 -14.58901 -14.44139 -13.94756 -13.57363 -13.34717 -13.08575 -13.05495 -12.87717 -12.71295 -12.39127 -12.15316 -12.12886 -11.63333 -11.34821 -11.20924 -11.08636 -9.91711 -9.79778 -8.43413 -5.90171 1.36460 1.39716 1.52311 1.82334 2.05680 2.29885 2.84749 2.97990 3.08713 3.23545 3.27345 3.79375 3.88173 4.06786 4.26239 4.30321 4.38322 4.44631 4.55135 4.59402 4.81267 5.01091 5.03618 5.25034 5.29857 5.40858 5.43584 5.49620 5.78877 6.04938 6.63273 7.17144 7.61391 8.16587 8.74277 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.007994 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.617994 B = 3501.613164 C = 4080.934258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.017 4.017 3 Si 0.989 3.011 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.321 4.321 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.447 3.553 11 O -0.599 6.599 12 C -0.099 4.099 13 H 0.094 0.906 14 C -0.091 4.091 15 C -0.139 4.139 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.103 4.103 19 H 0.156 0.844 20 C 0.438 3.562 21 F -0.190 7.190 22 F -0.184 7.184 23 F -0.191 7.191 24 H 0.275 0.725 25 H 0.390 0.610 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -14.125 0.777 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.216 4.216 3 Si 0.813 3.187 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.451 4.451 8 H 0.099 0.901 9 N -0.208 5.208 10 C 0.235 3.765 11 O -0.485 6.485 12 C -0.121 4.121 13 H 0.112 0.888 14 C -0.128 4.128 15 C -0.176 4.176 16 C -0.131 4.131 17 C -0.168 4.168 18 C -0.123 4.123 19 H 0.173 0.827 20 C 0.384 3.616 21 F -0.171 7.171 22 F -0.166 7.166 23 F -0.172 7.172 24 H 0.084 0.916 25 H 0.223 0.777 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.800 -13.929 0.812 13.976 hybrid contribution -0.369 1.544 0.434 1.645 sum 0.431 -12.385 1.246 12.455 Atomic orbital electron populations 1.69684 1.06848 1.29002 1.50952 1.26008 0.96483 1.02390 0.96767 0.84988 0.77876 0.77245 0.78610 1.19512 1.19919 1.19857 1.19621 0.92592 0.83957 1.48952 0.90148 1.42037 1.08945 1.04970 1.64840 1.20498 0.88301 0.85492 0.82236 1.90367 1.15000 1.87204 1.55953 1.21251 1.00702 0.93200 0.96956 0.88755 1.21363 0.97539 0.99830 0.94104 1.21795 0.96006 1.01505 0.98291 1.21293 1.01574 0.97881 0.92316 1.21817 0.91761 1.02794 1.00468 1.22448 1.01994 0.99557 0.88252 0.82685 1.21192 0.74396 0.79333 0.86632 1.93150 1.35204 1.92500 1.96255 1.93134 1.94994 1.75026 1.53443 1.93248 1.74290 1.53138 1.96531 0.91554 0.77700 0.87493 0.92180 0.90634 0.92206 0.91376 0.89389 0.91285 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.48 13.05 21.66 0.28 -51.20 16 2 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 3 Si 0.99 44.17 29.55 68.60 2.03 46.19 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.32 -18.41 9.68 84.04 0.81 -17.59 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -29.65 5.28 -306.99 -1.62 -31.27 16 10 C 0.45 20.33 4.15 87.66 0.36 20.69 16 11 O -0.60 -30.28 10.86 -3.04 -0.03 -30.32 16 12 C -0.10 -3.25 2.44 -11.54 -0.03 -3.28 16 13 H 0.09 2.91 7.44 -2.39 -0.02 2.89 16 14 C -0.09 -2.39 5.44 30.59 0.17 -2.22 16 15 C -0.14 -3.84 5.63 30.59 0.17 -3.67 16 16 C -0.09 -2.19 5.92 30.60 0.18 -2.01 16 17 C -0.13 -3.81 4.65 30.60 0.14 -3.67 16 18 C -0.10 -2.93 2.06 -10.79 -0.02 -2.95 16 19 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 20 C 0.44 15.12 2.63 71.98 0.19 15.31 16 21 F -0.19 -6.71 16.57 44.97 0.75 -5.97 16 22 F -0.18 -5.74 17.03 44.97 0.77 -4.98 16 23 F -0.19 -8.44 14.33 44.97 0.64 -7.79 16 24 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.39 19.97 7.74 -92.71 -0.72 19.25 16 26 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.06 2.25 5.45 -2.39 -0.01 2.23 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 2.69 5.10 -2.39 -0.01 2.68 16 33 H 0.08 1.96 7.96 -2.39 -0.02 1.95 16 Total: -1.00 -65.63 274.10 5.69 -59.94 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.43 Total: 25.27 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 2.45 Total: 0.12 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.34 Total: -82.47 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.03 Total: -30.32 kcal Atomic # 9 Polarization: -20.89 SS G_CDS: 2.16 Total: -18.74 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.63 5.69 -59.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134480826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.330 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds