Wall clock time and date at job start Mon Mar 30 2020 00:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48493 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47264 * 300.00276 * 3 2 1 6 6 H 1.48502 * 109.47147 * 59.99804 * 3 2 1 7 7 C 1.37874 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47045 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47390 * 179.97438 * 10 9 7 12 12 C 1.34778 * 117.00318 * 179.97438 * 11 10 9 13 13 O 1.21534 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.47271 * 119.99838 * 180.02562 * 12 11 10 15 15 C 1.36177 * 126.45596 * 179.97438 * 14 12 11 16 16 O 1.34230 * 106.93714 * 180.28096 * 15 14 12 17 17 C 1.34057 * 108.24268 * 359.57107 * 16 15 14 18 18 C 1.50701 * 125.36929 * 180.17305 * 17 16 15 19 19 C 1.53780 * 113.61260 * 37.80046 * 18 17 16 20 20 C 1.53785 * 87.08219 * 220.02259 * 19 18 17 21 21 C 1.53775 * 87.07870 * 25.43470 * 20 19 18 22 22 N 1.29917 * 109.26363 * 0.43729 * 17 16 15 23 23 H 0.96997 * 120.00312 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47291 * 60.00042 * 9 7 2 25 25 H 1.08996 * 109.47386 * 299.99800 * 9 7 2 26 26 H 1.08998 * 109.47082 * 59.99865 * 10 9 7 27 27 H 1.09001 * 109.47158 * 300.00398 * 10 9 7 28 28 H 1.08002 * 126.52731 * 0.02562 * 15 14 12 29 29 H 1.08995 * 112.85493 * 169.10886 * 18 17 16 30 30 H 1.08995 * 113.61936 * 334.56988 * 19 18 17 31 31 H 1.09006 * 113.61408 * 105.47602 * 19 18 17 32 32 H 1.09000 * 113.60800 * 270.88681 * 20 19 18 33 33 H 1.08993 * 113.69255 * 139.99560 * 20 19 18 34 34 H 1.09002 * 113.61358 * 220.01673 * 21 20 19 35 35 H 1.09003 * 113.61399 * 89.11990 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 0.0001 12 6 2.2536 -6.0499 -0.0004 13 8 3.4672 -5.9862 -0.0008 14 6 1.5850 -7.3621 -0.0004 15 6 2.1935 -8.5803 -0.0013 16 8 1.2196 -9.5039 -0.0072 17 6 0.0390 -8.8689 -0.0003 18 6 -1.3114 -9.5380 0.0001 19 6 -1.3665 -10.8136 0.8571 20 6 -2.2290 -11.4303 -0.2569 21 6 -1.5512 -10.4421 -1.2206 22 7 0.2424 -7.5858 0.0003 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6042 0.8894 27 1 2.8721 -3.6042 -0.8905 28 1 3.2572 -8.7675 -0.0018 29 1 -2.1280 -8.8432 0.1960 30 1 -0.3987 -11.2997 0.9794 31 1 -1.8983 -10.6838 1.7997 32 1 -3.2972 -11.2537 -0.1302 33 1 -1.9944 -12.4741 -0.4654 34 1 -2.2320 -10.0122 -1.9553 35 1 -0.6338 -10.8266 -1.6662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193036879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:26 Heat of formation + Delta-G solvation = -54.088504 kcal Electronic energy + Delta-G solvation = -18922.628073 eV Core-core repulsion = 15695.057324 eV Total energy + Delta-G solvation = -3227.570749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.62842 -39.75997 -38.97235 -36.13560 -35.01196 -33.30177 -31.01146 -30.18252 -26.53729 -26.07977 -25.60658 -24.06740 -21.96695 -21.21018 -20.70309 -19.52798 -18.16338 -17.13334 -17.01610 -16.24886 -15.98286 -15.87761 -15.78443 -15.38148 -14.49159 -13.90068 -13.32222 -13.22440 -12.96350 -12.81849 -12.78518 -12.34535 -11.50417 -11.40068 -11.21108 -11.02422 -10.93130 -10.87740 -10.84026 -10.75246 -10.73258 -10.43527 -9.64204 -9.63774 -9.25976 -9.15943 -8.41876 -6.07381 -4.11890 0.89285 1.83289 2.32325 2.97637 3.18682 3.29428 3.36616 3.41564 3.70923 4.10011 4.19771 4.40523 4.41560 4.52637 4.62685 5.04655 5.20351 5.25034 5.28985 5.29757 5.38777 5.45961 5.51092 5.54308 5.63858 5.87358 5.99290 6.08613 6.10221 6.65006 6.87325 7.36768 7.59786 7.66714 7.89034 8.15167 8.26980 8.93921 9.52225 11.04184 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.003244 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.563442 B = 8628.287858 C = 9287.678236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.333 6.333 12 C 0.545 3.455 13 O -0.512 6.512 14 C -0.046 4.046 15 C 0.014 3.986 16 O -0.194 6.194 17 C 0.204 3.796 18 C -0.020 4.020 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.131 4.131 22 N -0.435 5.435 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.234 0.766 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -24.500 -0.208 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.248 6.248 12 C 0.389 3.611 13 O -0.402 6.402 14 C -0.165 4.165 15 C -0.059 4.059 16 O -0.080 6.080 17 C -0.006 4.006 18 C -0.039 4.039 19 C -0.171 4.171 20 C -0.176 4.176 21 C -0.169 4.169 22 N -0.163 5.163 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.251 0.749 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.845 -23.829 -0.210 23.999 hybrid contribution 1.240 0.693 0.003 1.420 sum -1.606 -23.135 -0.207 23.192 Atomic orbital electron populations 1.69992 1.06087 1.26850 1.49818 1.24991 0.94919 0.99389 0.94913 0.86412 0.80029 0.83161 0.77681 1.19599 1.20836 1.20842 1.21012 0.93196 0.90057 1.52094 0.92174 1.19178 0.94181 0.88834 0.99078 1.23758 0.96529 0.78506 1.01090 1.86706 1.41257 1.15127 1.81692 1.19440 0.84638 0.84027 0.73028 1.90850 1.14145 1.88030 1.47201 1.20881 0.89812 0.93267 1.12502 1.25275 0.94602 0.85648 1.00364 1.84338 1.15738 1.38585 1.69356 1.26208 0.87920 0.86100 1.00362 1.21348 0.87051 0.95634 0.99841 1.23030 1.01456 0.94409 0.98181 1.22817 0.99701 0.99327 0.95798 1.23031 1.01778 0.96092 0.96002 1.70968 1.15068 1.14665 1.15644 0.92767 0.95220 0.95228 0.92074 0.92069 0.74944 0.84641 0.89239 0.90165 0.89390 0.90638 0.90038 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.52 16 10 C 0.07 1.72 5.42 37.16 0.20 1.92 16 11 O -0.33 -7.44 10.23 -40.71 -0.42 -7.86 16 12 C 0.55 10.67 7.96 34.40 0.27 10.94 16 13 O -0.51 -10.37 16.68 -19.29 -0.32 -10.69 16 14 C -0.05 -0.76 7.04 -83.04 -0.58 -1.34 16 15 C 0.01 0.17 11.95 29.99 0.36 0.53 16 16 O -0.19 -2.19 10.40 6.56 0.07 -2.12 16 17 C 0.20 2.51 7.33 -13.09 -0.10 2.41 16 18 C -0.02 -0.17 4.29 -90.96 -0.39 -0.56 16 19 C -0.13 -0.84 7.62 -25.92 -0.20 -1.04 16 20 C -0.14 -0.70 8.08 -25.92 -0.21 -0.91 16 21 C -0.13 -0.87 7.63 -25.92 -0.20 -1.07 16 22 N -0.44 -7.11 11.36 -7.67 -0.09 -7.20 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.23 1.92 8.06 -52.49 -0.42 1.49 16 29 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.58 7.82 -51.93 -0.41 0.17 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -33.68 313.34 -6.32 -40.00 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -4.59 Total: -5.04 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.40 Total: -2.37 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.65 Total: -33.34 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.67 Total: -20.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.68 -6.32 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193036879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.092 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds