Wall clock time and date at job start Sun Mar 29 2020 23:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47501 * 240.00444 * 3 2 1 5 5 H 1.48510 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99918 * 3 2 1 7 7 C 1.38705 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99676 * 359.97438 * 7 2 1 10 10 C 1.35527 * 116.99627 * 185.06799 * 9 7 2 11 11 C 1.38831 * 120.16025 * 354.39561 * 10 9 7 12 12 C 1.38022 * 120.06839 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.40696 * 359.95623 * 12 11 10 14 14 C 1.37835 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.39668 * 119.91853 * 0.02562 * 14 13 12 16 16 C 1.47529 * 120.19410 * 179.97438 * 15 14 13 17 17 O 1.21596 * 119.99940 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00576 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00532 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47058 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47229 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47341 * 179.97438 * 21 20 19 23 23 H 0.96997 * 120.00153 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.96770 * 0.02562 * 11 10 9 25 25 H 1.08000 * 119.80052 * 179.97438 * 12 11 10 26 26 H 1.07992 * 119.84379 * 180.02562 * 13 12 11 27 27 H 1.07997 * 120.03843 * 179.74542 * 14 13 12 28 28 H 0.97003 * 119.99429 * 359.97438 * 18 16 15 29 29 H 1.08999 * 109.47113 * 299.99628 * 19 18 16 30 30 H 1.08995 * 109.46943 * 60.00151 * 19 18 16 31 31 H 1.09004 * 109.47234 * 299.99903 * 20 19 18 32 32 H 1.09000 * 109.47621 * 60.00062 * 20 19 18 33 33 H 1.08996 * 109.47130 * 300.00405 * 21 20 19 34 34 H 1.09003 * 109.47208 * 59.99572 * 21 20 19 35 35 H 0.96701 * 113.99648 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0686 -3.5030 0.1056 11 6 3.4554 -3.4402 0.0911 12 6 4.2012 -4.5967 0.1988 13 6 3.5745 -5.8264 0.3228 14 6 2.1986 -5.9076 0.3394 15 6 1.4308 -4.7460 0.2303 16 6 -0.0422 -4.8260 0.2468 17 8 -0.7072 -3.8126 0.1511 18 7 -0.6509 -6.0224 0.3680 19 6 -2.1136 -6.1018 0.3849 20 6 -2.5434 -7.5628 0.5316 21 6 -4.0711 -7.6456 0.5500 22 8 -4.4725 -9.0103 0.6864 23 1 -0.4850 0.8400 0.0004 24 1 3.9513 -2.4856 -0.0045 25 1 5.2798 -4.5428 0.1866 26 1 4.1669 -6.7254 0.4069 27 1 1.7149 -6.8688 0.4322 28 1 -0.1204 -6.8309 0.4440 29 1 -2.4991 -5.5240 1.2250 30 1 -2.5102 -5.6977 -0.5465 31 1 -2.1579 -8.1410 -0.3082 32 1 -2.1469 -7.9665 1.4632 33 1 -4.4562 -7.0675 1.3899 34 1 -4.4681 -7.2418 -0.3814 35 1 -5.4308 -9.1382 0.7057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194135881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:13 Heat of formation + Delta-G solvation = -89.298781 kcal Electronic energy + Delta-G solvation = -19418.657102 eV Core-core repulsion = 16189.559521 eV Total energy + Delta-G solvation = -3229.097581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58432 -38.19004 -37.22031 -36.32371 -34.70998 -32.34049 -31.69974 -30.08538 -28.91064 -25.67179 -25.15552 -22.83042 -21.76993 -21.21105 -19.80508 -18.06172 -17.76075 -17.27363 -16.09122 -16.00299 -15.48238 -14.64412 -14.48150 -14.33913 -14.14991 -13.85207 -13.64471 -13.52057 -12.80315 -12.60246 -12.47073 -11.89480 -11.70764 -11.43093 -11.32443 -11.20954 -11.11320 -10.87611 -10.78629 -10.47244 -10.17499 -9.57116 -8.87332 -8.84987 -8.55665 -8.25966 -7.30252 -6.43723 -4.03819 1.72580 2.32865 3.12093 3.14288 3.16592 3.53008 3.76180 3.94208 4.21002 4.64862 4.82261 4.98487 5.07439 5.10725 5.18499 5.40156 5.47498 5.50184 5.55413 5.67998 5.75459 6.01741 6.07185 6.12779 6.19730 6.57223 6.69806 6.91642 6.95115 7.06883 7.24626 7.29788 7.38044 7.70266 7.92728 8.13212 8.95728 9.10622 9.68316 10.70101 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.004885 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.550451 B = 5730.678628 C = 7133.687912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.405 4.405 8 H 0.094 0.906 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.554 3.446 17 O -0.502 6.502 18 N -0.744 5.744 19 C 0.127 3.873 20 C -0.131 4.131 21 C 0.078 3.922 22 O -0.577 6.577 23 H 0.272 0.728 24 H 0.132 0.868 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.393 0.607 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -12.770 1.072 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.481 4.481 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.343 3.657 17 O -0.376 6.376 18 N -0.400 5.400 19 C 0.003 3.997 20 C -0.169 4.169 21 C 0.000 4.000 22 O -0.382 6.382 23 H 0.082 0.918 24 H 0.149 0.851 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.100 -11.810 0.975 12.034 hybrid contribution 0.244 0.445 0.032 0.509 sum -1.856 -11.364 1.006 11.559 Atomic orbital electron populations 1.70117 1.05985 1.27824 1.42529 1.25382 0.95796 0.98946 0.96156 0.85795 0.78785 0.79660 0.79257 1.19365 1.20158 1.19367 1.21460 0.91879 0.81155 1.53572 0.88912 1.84177 1.33518 1.10969 1.73544 1.19275 0.89859 0.87395 0.90499 1.21156 0.93378 0.99337 1.11857 1.20898 0.98642 0.92317 0.95088 1.20465 0.94059 0.97130 1.13345 1.20770 0.93863 0.95525 0.95553 1.18845 0.91903 0.92185 1.20304 1.18239 0.87856 0.82765 0.76814 1.90948 1.65822 1.33863 1.46931 1.45844 1.06241 1.09325 1.78634 1.21009 0.81487 0.94817 1.02400 1.21682 0.94809 0.96727 1.03672 1.22048 0.95130 0.82620 1.00174 1.86450 1.28036 1.26645 1.97092 0.91818 0.85071 0.87175 0.87257 0.87021 0.77284 0.91661 0.91668 0.90670 0.90668 0.93160 0.93176 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.22 13.67 55.48 0.76 -24.46 16 2 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.40 -11.53 9.49 30.90 0.29 -11.24 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.69 7.84 -21.08 -0.17 -3.86 16 10 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 11 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 12 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.82 10.03 -39.61 -0.40 -4.21 16 14 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 15 C -0.23 -5.00 5.89 -104.81 -0.62 -5.62 16 16 C 0.55 12.35 7.76 -12.47 -0.10 12.26 16 17 O -0.50 -13.89 15.17 -16.57 -0.25 -14.15 16 18 N -0.74 -12.19 5.51 -61.35 -0.34 -12.53 16 19 C 0.13 1.82 5.67 -4.04 -0.02 1.79 16 20 C -0.13 -1.42 5.70 -26.73 -0.15 -1.57 16 21 C 0.08 0.75 7.05 37.16 0.26 1.01 16 22 O -0.58 -5.56 13.66 -35.23 -0.48 -6.04 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.11 1.49 6.40 -52.49 -0.34 1.15 16 28 H 0.39 5.15 6.50 -40.82 -0.27 4.89 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -36.07 305.32 -6.39 -42.46 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.27 Total: 8.21 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.22 Total: -9.78 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.42 Total: -36.99 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.90 Total: -24.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.07 -6.39 -42.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194135881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.840 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds