Wall clock time and date at job start Mon Mar 30 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40197 * 120.36340 * 2 1 4 4 C 1.35354 * 119.94735 * 179.76654 * 3 2 1 5 5 N 1.35764 * 120.70156 * 0.50766 * 4 3 2 6 6 C 1.46500 * 119.62516 * 179.75960 * 5 4 3 7 7 C 1.50706 * 109.46949 * 269.72820 * 6 5 4 8 8 O 1.20818 * 120.00197 * 359.72387 * 7 6 5 9 9 O 1.34230 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00173 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47372 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47080 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99886 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99908 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00150 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47259 * 89.99796 * 16 14 12 18 18 H 1.48500 * 109.47184 * 210.00342 * 16 14 12 19 19 H 1.48499 * 109.46822 * 330.00141 * 16 14 12 20 20 C 1.34664 * 120.74880 * 359.48600 * 5 4 3 21 21 O 1.22062 * 119.98182 * 180.27601 * 20 5 4 22 22 C 1.36400 * 120.37327 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47445 * 269.98141 * 1 2 3 24 24 H 1.08996 * 109.47403 * 29.98234 * 1 2 3 25 25 H 1.09001 * 109.46679 * 149.98581 * 1 2 3 26 26 H 1.07997 * 120.02800 * 0.04109 * 3 2 1 27 27 H 1.08004 * 119.64986 * 180.26667 * 4 3 2 28 28 H 1.09000 * 109.47175 * 149.72846 * 6 5 4 29 29 H 1.09001 * 109.47297 * 29.72353 * 6 5 4 30 30 H 1.09003 * 109.46718 * 299.99877 * 10 9 7 31 31 H 1.08998 * 109.47176 * 60.00127 * 10 9 7 32 32 H 1.08997 * 109.46822 * 300.00275 * 11 10 9 33 33 H 1.08998 * 109.47020 * 59.99843 * 11 10 9 34 34 H 0.96996 * 119.99888 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.34399 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 0.0048 5 7 4.2538 0.0275 -0.0007 6 6 5.7187 0.0444 -0.0007 7 6 6.2210 0.0502 -1.4216 8 8 5.4361 0.0360 -2.3399 9 8 7.5406 0.0659 -1.6669 10 6 7.9524 0.0700 -3.0592 11 6 9.4802 0.0877 -3.1393 12 6 9.9075 0.0913 -4.5844 13 1 9.1637 0.0814 -5.3674 14 6 11.2479 0.1071 -4.9070 15 7 12.1536 0.1186 -3.9533 16 14 11.7776 0.1123 -6.6983 17 1 11.9011 1.5135 -7.1739 18 1 13.0889 -0.5723 -6.8287 19 1 10.7636 -0.6005 -7.5163 20 6 3.6017 -1.1507 -0.0007 21 8 4.2314 -2.1964 -0.0006 22 6 2.1966 -1.1768 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6820 2.1486 0.0007 27 1 4.1102 2.1346 0.0091 28 1 6.0923 -0.8413 0.5132 29 1 6.0718 0.9386 0.5130 30 1 7.5734 -0.8250 -3.5527 31 1 7.5520 0.9549 -3.5539 32 1 9.8595 0.9824 -2.6456 33 1 9.8802 -0.7974 -2.6447 34 1 13.0966 0.1293 -4.1802 35 1 1.6684 -2.1187 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194317845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:49 Heat of formation + Delta-G solvation = -96.622575 kcal Electronic energy + Delta-G solvation = -19181.165463 eV Core-core repulsion = 15951.750298 eV Total energy + Delta-G solvation = -3229.415165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66028 -39.83396 -37.16685 -36.42026 -35.34702 -33.39106 -31.01655 -30.26602 -29.59921 -27.39920 -24.94662 -23.90943 -22.19903 -21.20859 -20.63980 -17.83098 -17.75418 -17.60023 -16.42333 -16.25608 -16.06859 -15.85323 -15.03334 -14.50121 -14.44639 -14.27760 -13.76506 -13.65658 -12.95518 -12.82828 -12.58681 -12.38728 -12.29476 -11.95735 -11.85169 -11.28304 -11.10098 -10.80490 -10.76135 -10.50701 -10.12113 -9.96622 -9.72132 -9.63809 -9.33210 -8.46955 -8.15426 -6.12976 -4.17591 0.61830 1.71650 2.21706 2.36126 3.05200 3.27131 3.33335 3.37730 3.58160 4.27884 4.36676 4.37622 4.52733 4.73891 4.94501 4.98564 5.00434 5.16529 5.22857 5.23696 5.32427 5.52856 5.73362 5.85931 6.00042 6.04196 6.15798 6.31600 6.57585 6.84630 6.87977 7.50815 7.58056 7.81626 7.90133 8.04460 8.20418 8.87771 9.47014 10.98535 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.003235 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.647734 B = 8653.750878 C = 8762.717240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.229 4.229 4 C 0.144 3.856 5 N -0.486 5.486 6 C 0.097 3.903 7 C 0.443 3.557 8 O -0.506 6.506 9 O -0.352 6.352 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.521 3.479 21 O -0.547 6.547 22 C -0.247 4.247 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.679 4.630 11.906 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.198 5.198 6 C -0.027 4.027 7 C 0.284 3.716 8 O -0.394 6.394 9 O -0.268 6.268 10 C 0.004 3.996 11 C -0.012 4.012 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.324 3.676 21 O -0.429 6.429 22 C -0.268 4.268 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.226 3.928 11.616 23.653 hybrid contribution 0.356 0.129 -1.194 1.252 sum -19.870 4.057 10.422 22.801 Atomic orbital electron populations 1.20922 0.90346 1.03605 1.03011 1.20209 0.96776 0.92671 0.89260 1.20522 0.92293 0.98940 1.13497 1.21949 0.93681 0.89514 0.93062 1.45144 1.07198 1.07487 1.59929 1.21367 0.78877 1.08761 0.93657 1.23514 0.82571 0.73617 0.91894 1.90676 1.57195 1.45130 1.46423 1.86504 1.22942 1.82384 1.34928 1.23718 0.99866 1.01088 0.74921 1.19182 0.85191 0.98966 0.97879 1.20968 0.92108 1.52331 0.91158 0.92254 1.24984 0.96480 0.94798 0.97864 1.69972 1.01036 1.49681 1.32128 0.86456 0.78095 0.78252 0.84430 1.20462 1.20997 1.19697 1.17134 0.89423 0.82426 0.78666 1.90983 1.69091 1.30226 1.52626 1.21912 0.92138 0.99617 1.13147 0.90128 0.90748 0.90811 0.83647 0.81936 0.84106 0.84802 0.92162 0.92195 0.95287 0.95219 0.92658 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.03 36.00 0.36 -0.34 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.82 9.71 -39.87 -0.39 -2.21 16 4 C 0.14 1.29 10.28 -16.84 -0.17 1.11 16 5 N -0.49 -6.03 2.07 -121.06 -0.25 -6.28 16 6 C 0.10 1.17 5.93 -5.19 -0.03 1.14 16 7 C 0.44 7.69 8.02 36.01 0.29 7.98 16 8 O -0.51 -10.30 16.18 -18.74 -0.30 -10.61 16 9 O -0.35 -6.94 10.22 -39.26 -0.40 -7.34 16 10 C 0.08 1.71 5.40 37.16 0.20 1.91 16 11 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 C 0.52 7.87 7.40 -15.45 -0.11 7.75 16 21 O -0.55 -10.41 16.64 4.86 0.08 -10.33 16 22 C -0.25 -2.96 9.65 -39.38 -0.38 -3.34 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 27 H 0.16 0.88 8.03 -52.48 -0.42 0.46 16 28 H 0.14 1.71 7.39 -51.93 -0.38 1.33 16 29 H 0.13 0.98 8.01 -51.93 -0.42 0.57 16 30 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -36.08 313.97 -6.40 -42.48 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.56 Total: -3.92 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.41 Total: 0.45 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.49 Total: -31.93 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.62 Total: -28.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.08 -6.40 -42.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194317845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.138 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds