Wall clock time and date at job start Mon Mar 30 2020 00:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21553 * 120.00289 * 359.72074 * 13 12 11 15 15 C 1.47869 * 119.99621 * 179.72373 * 13 12 11 16 16 C 1.39516 * 120.09551 * 359.72071 * 15 13 12 17 17 C 1.38510 * 119.90545 * 179.78689 * 16 15 13 18 18 O 1.35911 * 119.95259 * 180.23060 * 17 16 15 19 19 C 1.38728 * 120.09438 * 0.47271 * 17 16 15 20 20 C 1.38729 * 120.18740 * 359.77701 * 19 17 16 21 21 O 1.35908 * 119.95560 * 179.97438 * 20 19 17 22 22 C 1.38513 * 120.09414 * 359.97438 * 20 19 17 23 23 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 25 25 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 26 26 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 27 27 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 28 28 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 29 29 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.04638 * 0.02562 * 16 15 13 32 32 H 0.96701 * 114.00177 * 270.23830 * 18 17 16 33 33 H 1.07998 * 119.90966 * 179.76785 * 19 17 16 34 34 H 0.96698 * 114.00594 * 270.02847 * 21 20 19 35 35 H 1.07995 * 120.04784 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1549 -3.3399 0.0038 15 6 7.8580 -5.6579 0.0088 16 6 6.9531 -6.7199 0.0141 17 6 7.4191 -8.0242 0.0147 18 8 6.5385 -9.0594 0.0152 19 6 8.7834 -8.2755 0.0199 20 6 9.6866 -7.2225 0.0199 21 8 11.0222 -7.4740 0.0256 22 6 9.2292 -5.9151 0.0141 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6795 -0.8895 26 1 3.6587 -3.1493 -0.8920 27 1 3.6579 -3.1512 0.8880 28 1 5.9150 -2.1234 0.8891 29 1 5.9149 -2.1217 -0.8909 30 1 5.4096 -4.7549 -0.0021 31 1 5.8908 -6.5251 0.0138 32 1 6.2808 -9.3563 0.8987 33 1 9.1435 -9.2936 0.0242 34 1 11.4055 -7.5445 0.9106 35 1 9.9330 -5.0959 0.0145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230232403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:30 Heat of formation + Delta-G solvation = -107.818309 kcal Electronic energy + Delta-G solvation = -18729.888985 eV Core-core repulsion = 15499.988336 eV Total energy + Delta-G solvation = -3229.900648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73268 -39.29502 -38.23660 -36.00134 -35.58967 -33.41505 -31.74581 -30.75412 -29.72112 -27.32090 -24.48734 -23.06140 -22.47762 -20.95484 -20.39400 -19.11930 -17.58633 -17.29888 -16.93411 -16.68345 -16.22376 -15.67658 -15.42682 -15.33623 -14.62305 -14.23909 -14.08607 -13.63090 -13.28889 -12.73693 -12.42746 -12.36478 -11.99820 -11.92314 -11.44116 -11.18557 -11.10721 -10.92305 -10.30889 -10.03555 -9.83650 -9.67193 -9.36732 -9.25599 -9.04556 -8.94162 -8.57645 -6.08385 -4.07399 0.39028 0.71775 2.50081 3.06804 3.29937 3.35264 3.37611 3.41429 3.63578 3.89991 4.40382 4.42551 4.63114 4.74723 4.82283 5.17791 5.22062 5.25652 5.50349 5.59809 5.80488 5.83113 5.87448 5.95471 6.08641 6.24954 6.39253 6.61769 6.73819 7.11860 7.19160 7.23001 7.32722 7.49066 7.73612 8.15151 8.47825 8.95234 9.53732 11.04836 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.003221 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.790898 B = 8689.546100 C = 9450.406411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.552 3.448 14 O -0.536 6.536 15 C -0.095 4.095 16 C -0.122 4.122 17 C 0.118 3.882 18 O -0.493 6.493 19 C -0.151 4.151 20 C 0.115 3.885 21 O -0.493 6.493 22 C -0.096 4.096 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.400 0.600 31 H 0.139 0.861 32 H 0.394 0.606 33 H 0.139 0.861 34 H 0.394 0.606 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.121 -18.091 3.438 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.368 5.368 13 C 0.338 3.662 14 O -0.414 6.414 15 C -0.098 4.098 16 C -0.141 4.141 17 C 0.073 3.927 18 O -0.304 6.304 19 C -0.170 4.170 20 C 0.071 3.929 21 O -0.304 6.304 22 C -0.116 4.116 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.157 0.843 32 H 0.251 0.749 33 H 0.157 0.843 34 H 0.250 0.750 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.482 -17.217 2.221 25.357 hybrid contribution -0.026 0.397 0.948 1.028 sum 18.456 -16.820 3.169 25.171 Atomic orbital electron populations 1.69908 1.06328 1.26999 1.50933 1.25028 0.94747 0.99251 0.94433 0.86774 0.80390 0.83509 0.78619 1.20218 1.21358 1.18890 1.21090 0.89278 0.94530 1.51194 0.90994 1.19503 0.97308 0.91360 0.96719 1.21723 0.90437 1.01212 1.01840 1.21735 0.96309 0.80645 1.02262 1.46106 1.06331 1.10395 1.73997 1.18142 0.82842 0.88036 0.77136 1.90785 1.55398 1.45390 1.49839 1.19755 0.93562 0.93182 1.03329 1.21686 1.00518 0.91540 1.00369 1.18039 0.87906 0.86698 1.00072 1.84871 1.62239 1.49400 1.33859 1.21859 0.92535 1.00329 1.02318 1.18069 0.83493 0.91087 1.00300 1.84860 1.18194 1.93568 1.33750 1.21586 0.95113 0.96904 0.97981 0.92664 0.96259 0.96685 0.92003 0.92015 0.91446 0.91428 0.76488 0.84326 0.74906 0.84303 0.74985 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.80 16 12 N -0.72 -9.72 5.51 -61.24 -0.34 -10.05 16 13 C 0.55 7.98 7.77 -12.32 -0.10 7.89 16 14 O -0.54 -9.64 16.34 5.32 0.09 -9.55 16 15 C -0.09 -1.09 5.87 -105.00 -0.62 -1.71 16 16 C -0.12 -1.15 9.48 -39.00 -0.37 -1.52 16 17 C 0.12 1.02 6.69 -39.30 -0.26 0.76 16 18 O -0.49 -3.66 13.50 -19.46 -0.26 -3.93 16 19 C -0.15 -1.25 9.91 -39.22 -0.39 -1.64 16 20 C 0.12 1.05 6.69 -39.30 -0.26 0.79 16 21 O -0.49 -3.83 13.50 -19.45 -0.26 -4.09 16 22 C -0.10 -1.05 9.53 -39.00 -0.37 -1.42 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.40 4.34 6.50 -40.82 -0.27 4.08 16 31 H 0.14 1.10 6.40 -52.49 -0.34 0.77 16 32 H 0.39 0.96 9.06 45.56 0.41 1.37 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.39 1.02 9.06 45.56 0.41 1.44 16 35 H 0.15 1.64 7.64 -52.49 -0.40 1.24 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -35.53 307.45 -5.76 -41.29 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.64 Total: 2.35 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.07 Total: -10.74 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.44 Total: -36.89 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.44 Total: -17.56 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.53 -5.76 -41.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.533 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds