Wall clock time and date at job start Mon Mar 30 2020 00:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21553 * 120.00289 * 359.72074 * 13 12 11 15 15 C 1.47869 * 119.99621 * 179.72373 * 13 12 11 16 16 C 1.39516 * 120.09551 * 359.72071 * 15 13 12 17 17 C 1.38510 * 119.90545 * 179.78689 * 16 15 13 18 18 O 1.35911 * 119.95259 * 180.23060 * 17 16 15 19 19 C 1.38728 * 120.09438 * 0.47271 * 17 16 15 20 20 C 1.38729 * 120.18740 * 359.77701 * 19 17 16 21 21 O 1.35908 * 119.95560 * 179.97438 * 20 19 17 22 22 C 1.38513 * 120.09414 * 359.97438 * 20 19 17 23 23 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 25 25 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 26 26 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 27 27 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 28 28 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 29 29 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.04638 * 0.02562 * 16 15 13 32 32 H 0.96701 * 114.00177 * 270.23830 * 18 17 16 33 33 H 1.07998 * 119.90966 * 179.76785 * 19 17 16 34 34 H 0.96698 * 114.00594 * 270.02847 * 21 20 19 35 35 H 1.07995 * 120.04784 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1549 -3.3399 0.0038 15 6 7.8580 -5.6579 0.0088 16 6 6.9531 -6.7199 0.0141 17 6 7.4191 -8.0242 0.0147 18 8 6.5385 -9.0594 0.0152 19 6 8.7834 -8.2755 0.0199 20 6 9.6866 -7.2225 0.0199 21 8 11.0222 -7.4740 0.0256 22 6 9.2292 -5.9151 0.0141 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6795 -0.8895 26 1 3.6587 -3.1493 -0.8920 27 1 3.6579 -3.1512 0.8880 28 1 5.9150 -2.1234 0.8891 29 1 5.9149 -2.1217 -0.8909 30 1 5.4096 -4.7549 -0.0021 31 1 5.8908 -6.5251 0.0138 32 1 6.2808 -9.3563 0.8987 33 1 9.1435 -9.2936 0.0242 34 1 11.4055 -7.5445 0.9106 35 1 9.9330 -5.0959 0.0145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230232403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:29 Heat of formation + Delta-G solvation = -137.392104 kcal Electronic energy + Delta-G solvation = -18731.171401 eV Core-core repulsion = 15499.988336 eV Total energy + Delta-G solvation = -3231.183064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.56699 -40.26715 -38.82235 -37.11111 -36.60697 -35.20644 -33.42900 -31.68856 -30.46069 -28.95154 -25.67982 -24.16379 -23.47770 -22.28869 -21.62778 -20.04686 -18.95478 -18.18034 -18.05863 -17.64463 -17.04982 -16.80394 -16.55853 -16.28650 -16.07434 -15.46810 -15.26064 -14.82919 -14.75275 -13.90688 -13.83075 -13.71310 -13.15661 -12.96435 -12.73883 -12.69883 -12.15528 -11.92492 -11.80197 -11.75706 -11.60608 -11.33754 -11.06884 -10.76166 -10.29713 -9.95831 -9.72897 -8.29354 -6.33293 -0.38721 0.04220 1.37403 1.38846 1.50524 1.61673 2.01250 2.36498 2.52971 2.95382 3.06590 3.30960 3.58445 3.93010 4.01513 4.06176 4.11463 4.18624 4.48052 4.54724 4.57555 4.86870 4.87194 5.02844 5.08098 5.13024 5.17690 5.30036 5.46163 5.49658 5.55256 5.65006 6.27323 6.42438 6.74550 6.75006 6.81761 7.06600 7.31686 8.87083 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.003221 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.790898 B = 8689.546100 C = 9450.406411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.125 3.875 12 N -0.708 5.708 13 C 0.552 3.448 14 O -0.578 6.578 15 C -0.108 4.108 16 C -0.122 4.122 17 C 0.125 3.875 18 O -0.500 6.500 19 C -0.144 4.144 20 C 0.122 3.878 21 O -0.502 6.502 22 C -0.112 4.112 23 H 0.266 0.734 24 H 0.022 0.978 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.414 0.586 31 H 0.152 0.848 32 H 0.417 0.583 33 H 0.160 0.840 34 H 0.416 0.584 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.657 -19.344 3.661 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.139 4.139 11 C 0.001 3.999 12 N -0.360 5.360 13 C 0.341 3.659 14 O -0.459 6.459 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.080 3.920 18 O -0.314 6.314 19 C -0.163 4.163 20 C 0.077 3.923 21 O -0.316 6.316 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.252 0.748 31 H 0.170 0.830 32 H 0.278 0.722 33 H 0.178 0.822 34 H 0.276 0.724 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.019 -18.523 2.477 27.386 hybrid contribution -0.526 0.613 0.898 1.207 sum 19.493 -17.910 3.375 26.686 Atomic orbital electron populations 1.70055 1.08237 1.28143 1.52731 1.25982 0.95577 1.03440 0.94233 0.85702 0.79559 0.78517 0.79156 1.19334 1.21077 1.17015 1.21469 0.91906 0.93275 1.50209 0.94351 1.19469 0.94067 0.94608 0.96900 1.21497 0.91779 0.98282 1.02354 1.21400 0.94584 0.82071 1.01822 1.45913 1.06606 1.09828 1.73654 1.18572 0.82455 0.88976 0.75938 1.90757 1.56350 1.46937 1.51883 1.19482 0.94165 0.91824 1.05675 1.21784 1.00836 0.91472 1.00042 1.18035 0.88281 0.86630 0.99072 1.84824 1.61899 1.48727 1.35994 1.22065 0.92238 1.01020 1.00990 1.18022 0.84211 0.90498 0.99561 1.84805 1.17547 1.93360 1.35891 1.21582 0.94781 0.97567 0.99207 0.92507 0.95929 0.96203 0.91660 0.91425 0.91869 0.92070 0.74821 0.83032 0.72228 0.82238 0.72357 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.03 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 11 C 0.12 3.89 5.67 86.38 0.49 4.38 16 12 N -0.71 -18.39 5.51 -465.93 -2.57 -20.96 16 13 C 0.55 15.74 7.77 86.79 0.67 16.41 16 14 O -0.58 -20.99 16.34 -3.88 -0.06 -21.05 16 15 C -0.11 -2.40 5.87 -20.11 -0.12 -2.51 16 16 C -0.12 -2.07 9.48 22.64 0.21 -1.86 16 17 C 0.12 1.82 6.69 22.45 0.15 1.97 16 18 O -0.50 -5.82 13.50 -92.55 -1.25 -7.06 16 19 C -0.14 -1.98 9.91 22.50 0.22 -1.75 16 20 C 0.12 2.00 6.69 22.45 0.15 2.15 16 21 O -0.50 -6.76 13.50 -92.51 -1.25 -8.01 16 22 C -0.11 -2.36 9.53 22.64 0.22 -2.14 16 23 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 25 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 8.29 6.50 -92.71 -0.60 7.69 16 31 H 0.15 2.05 6.40 -2.91 -0.02 2.04 16 32 H 0.42 0.59 9.06 -74.06 -0.67 -0.08 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.42 1.23 9.06 -74.06 -0.67 0.56 16 35 H 0.13 3.08 7.64 -2.91 -0.02 3.06 16 Total: -1.00 -76.93 307.45 -0.80 -77.73 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -0.85 Total: 8.36 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 2.99 Total: -16.10 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -2.27 Total: -79.90 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.56 Total: -36.13 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -76.93 -0.80 -77.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230232403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.663 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds