Wall clock time and date at job start Mon Mar 30 2020 00:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47638 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99670 * 3 2 1 5 5 C 1.50700 * 109.47661 * 175.00112 * 3 2 1 6 6 H 1.07996 * 120.00450 * 119.99817 * 5 3 2 7 7 C 1.37883 * 119.99496 * 300.00037 * 5 3 2 8 8 N 1.31506 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99587 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47288 * 59.99684 * 9 7 5 11 11 H 1.48496 * 109.46925 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46939 * 299.99971 * 9 7 5 13 13 N 1.46499 * 109.47145 * 295.00317 * 3 2 1 14 14 C 1.34777 * 120.00195 * 84.99285 * 13 3 2 15 15 O 1.21623 * 119.99973 * 0.02562 * 14 13 3 16 16 C 1.47241 * 119.99949 * 180.27777 * 14 13 3 17 17 C 1.40255 * 120.23549 * 89.45458 * 16 14 13 18 18 O 1.35655 * 120.12111 * 359.96978 * 17 16 14 19 19 C 1.38545 * 119.75430 * 179.74864 * 17 16 14 20 20 C 1.38249 * 120.23838 * 0.52239 * 19 17 16 21 21 C 1.38245 * 120.47869 * 359.72844 * 20 19 17 22 22 C 1.38539 * 120.24271 * 0.02562 * 21 20 19 23 23 O 1.35656 * 120.12562 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46942 * 300.00584 * 1 2 3 25 25 H 1.08999 * 109.46845 * 60.00061 * 1 2 3 26 26 H 1.08993 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47251 * 239.99744 * 2 1 3 28 28 H 1.09008 * 109.47049 * 120.00022 * 2 1 3 29 29 H 0.97002 * 120.00466 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00069 * 265.00013 * 13 3 2 31 31 H 0.96702 * 113.99874 * 89.99769 * 18 17 16 32 32 H 1.08005 * 119.88028 * 180.25387 * 19 17 16 33 33 H 1.07995 * 119.75687 * 179.74551 * 20 19 17 34 34 H 1.08005 * 119.87476 * 179.97438 * 21 20 19 35 35 H 0.96696 * 114.00094 * 269.98052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3807 11 1 6.3978 0.2155 2.6498 12 1 6.5966 0.1450 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3414 2.6326 -0.4315 16 6 0.0434 3.3174 -2.6271 17 6 -0.5849 2.5782 -3.6400 18 8 -0.8343 1.2565 -3.4634 19 6 -0.9540 3.2038 -4.8197 20 6 -0.6953 4.5492 -5.0048 21 6 -0.0718 5.2860 -4.0150 22 6 0.3012 4.6817 -2.8255 23 8 0.9134 5.4068 -1.8561 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0611 2.9500 30 1 2.2720 2.1231 -1.9978 31 1 -1.6954 1.0685 -3.0653 32 1 -1.4417 2.6375 -5.5994 33 1 -0.9827 5.0282 -5.9291 34 1 0.1259 6.3364 -4.1701 35 1 1.8780 5.4176 -1.9229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231040262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:08 Heat of formation + Delta-G solvation = -100.334854 kcal Electronic energy + Delta-G solvation = -20437.899868 eV Core-core repulsion = 17208.323727 eV Total energy + Delta-G solvation = -3229.576141 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37360 -38.30043 -37.81194 -35.72654 -34.98163 -32.37995 -31.26915 -30.07156 -29.39639 -26.94391 -23.94495 -22.74580 -22.55287 -20.51435 -19.37214 -18.90251 -17.62080 -17.38653 -16.32522 -15.99947 -15.45705 -15.22061 -14.76020 -14.52654 -14.20753 -13.95739 -13.26326 -12.88718 -12.67771 -12.26636 -11.98365 -11.79563 -11.45818 -11.24340 -11.01592 -10.93661 -10.81130 -10.65417 -10.32106 -10.16248 -9.59268 -9.11995 -9.05372 -8.76838 -8.67292 -8.48227 -7.80879 -6.11050 -4.20665 1.00809 1.07776 3.25805 3.30744 3.31310 3.32020 3.37919 3.90678 4.08700 4.37783 4.40221 4.83108 5.10082 5.15371 5.20329 5.34840 5.65734 5.72053 6.16625 6.17397 6.27208 6.43043 6.48876 6.52162 6.70030 7.10077 7.21885 7.39537 7.46247 7.59418 7.63265 7.66647 7.75275 7.91670 8.19736 8.66712 8.77718 9.11969 9.46366 10.94262 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.005880 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.411365 B = 4760.669998 C = 5316.264614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.695 5.695 14 C 0.560 3.440 15 O -0.540 6.540 16 C -0.170 4.170 17 C 0.154 3.846 18 O -0.488 6.488 19 C -0.160 4.160 20 C -0.081 4.081 21 C -0.160 4.160 22 C 0.154 3.846 23 O -0.488 6.488 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.022 0.978 27 H 0.032 0.968 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.396 0.604 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 6.176 -13.893 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.342 5.342 14 C 0.344 3.656 15 O -0.419 6.419 16 C -0.175 4.175 17 C 0.108 3.892 18 O -0.299 6.299 19 C -0.178 4.178 20 C -0.100 4.100 21 C -0.178 4.178 22 C 0.108 3.892 23 O -0.299 6.299 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.254 0.746 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.488 6.051 -13.029 15.763 hybrid contribution 1.308 -0.082 -0.193 1.324 sum -5.181 5.970 -13.222 15.404 Atomic orbital electron populations 1.21852 0.98434 0.98030 1.01247 1.21913 0.92668 0.99701 1.02243 1.18818 0.94199 0.89257 0.80807 0.93283 1.21176 0.90643 1.39218 1.06261 0.92205 1.24877 0.98567 0.94792 0.95363 1.69882 1.35217 1.37477 1.09321 0.86517 0.84887 0.78281 0.77453 1.20206 1.21118 1.20187 1.46478 1.14170 1.55121 1.18409 1.17644 0.83188 0.78773 0.86006 1.90786 1.51730 1.59922 1.39426 1.21093 1.05760 0.94111 0.96525 1.18281 0.96176 0.83135 0.91605 1.84752 1.41824 1.19119 1.84225 1.21362 1.03238 0.95124 0.98107 1.20923 0.97038 0.93355 0.98661 1.21362 1.02811 1.00990 0.92645 1.18284 0.95714 0.87638 0.87518 1.84780 1.24731 1.70830 1.49572 0.93355 0.93925 0.95871 0.94958 0.88350 0.92495 0.78055 0.74647 0.84851 0.85032 0.84836 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.92 5.02 -56.07 -0.28 -15.20 16 14 C 0.56 11.75 4.88 -12.60 -0.06 11.69 16 15 O -0.54 -13.32 14.24 5.26 0.07 -13.25 16 16 C -0.17 -2.87 5.65 -104.72 -0.59 -3.46 16 17 C 0.15 2.23 6.72 -38.71 -0.26 1.97 16 18 O -0.49 -7.04 12.95 -18.67 -0.24 -7.28 16 19 C -0.16 -1.79 9.97 -39.46 -0.39 -2.19 16 20 C -0.08 -0.81 10.02 -39.57 -0.40 -1.21 16 21 C -0.16 -1.81 9.97 -39.47 -0.39 -2.21 16 22 C 0.15 2.28 6.71 -38.71 -0.26 2.02 16 23 O -0.49 -7.33 12.95 -18.67 -0.24 -7.58 16 24 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 25 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.10 2.68 5.95 -51.92 -0.31 2.37 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 7.48 8.52 -40.82 -0.35 7.13 16 31 H 0.40 4.33 9.06 45.56 0.41 4.74 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.40 4.29 9.06 45.56 0.41 4.71 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -33.11 301.61 -5.85 -38.97 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -2.58 Total: 13.87 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.74 Total: -5.48 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.34 Total: -39.38 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.41 Total: -28.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.11 -5.85 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231040262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.369 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds