Wall clock time and date at job start Mon Mar 30 2020 00:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38543 * 119.83264 * 2 1 4 4 C 1.37741 * 120.34397 * 180.02562 * 3 2 1 5 5 C 1.39811 * 120.00386 * 359.70551 * 4 3 2 6 6 C 1.47542 * 120.16853 * 180.27321 * 5 4 3 7 7 O 1.21584 * 120.00377 * 180.27381 * 6 5 4 8 8 N 1.34785 * 119.99974 * 0.27427 * 6 5 4 9 9 C 1.46499 * 119.99948 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47065 * 179.97438 * 9 8 6 11 11 C 1.50692 * 109.47375 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00250 * 180.02562 * 11 10 9 14 14 N 1.31524 * 119.99907 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00101 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47223 * 90.00027 * 15 13 11 17 17 H 1.48497 * 109.47218 * 210.00114 * 15 13 11 18 18 H 1.48506 * 109.47157 * 330.00048 * 15 13 11 19 19 C 1.39971 * 119.66163 * 0.54443 * 5 4 3 20 20 O 1.35744 * 120.16670 * 179.74901 * 19 5 4 21 21 C 1.38434 * 119.83091 * 180.02562 * 2 1 3 22 22 O 1.35991 * 120.00487 * 0.02562 * 21 2 1 23 23 H 1.09000 * 109.47310 * 269.97392 * 1 2 3 24 24 H 1.08995 * 109.47353 * 29.97965 * 1 2 3 25 25 H 1.09001 * 109.46886 * 149.97874 * 1 2 3 26 26 H 1.07999 * 119.82768 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99859 * 180.02562 * 4 3 2 28 28 H 0.97005 * 120.00049 * 359.97438 * 8 6 5 29 29 H 1.08994 * 109.47156 * 299.99948 * 9 8 6 30 30 H 1.09000 * 109.46695 * 60.00292 * 9 8 6 31 31 H 1.09003 * 109.47428 * 300.00300 * 10 9 8 32 32 H 1.09002 * 109.47264 * 60.00209 * 10 9 8 33 33 H 0.96998 * 119.99852 * 179.97438 * 14 13 11 34 34 H 0.96700 * 114.00347 * 269.72670 * 20 19 5 35 35 H 0.96702 * 114.00104 * 269.97668 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2018 0.0000 4 6 3.5736 1.2141 -0.0005 5 6 4.2835 0.0097 0.0051 6 6 5.7589 0.0186 0.0107 7 8 6.3732 -1.0306 0.0106 8 7 6.4257 1.1900 0.0159 9 6 7.8906 1.1988 0.0219 10 6 8.3918 2.6444 0.0263 11 6 9.8987 2.6536 0.0332 12 1 10.4444 1.7216 0.0339 13 6 10.5808 3.8518 0.0386 14 7 11.8960 3.8598 0.0441 15 14 9.6371 5.4638 0.0381 16 1 9.3812 5.8880 1.4381 17 1 10.4362 6.5051 -0.6563 18 1 8.3435 5.2799 -0.6677 19 6 3.5874 -1.2047 -0.0002 20 8 4.2664 -2.3801 0.0001 21 6 2.1956 -1.2009 -0.0005 22 8 1.5123 -2.3767 -0.0016 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6507 2.1339 0.0004 27 1 4.1052 2.1542 -0.0001 28 1 5.9356 2.0271 0.0156 29 1 8.2534 0.6854 0.9123 30 1 8.2607 0.6891 -0.8677 31 1 8.0290 3.1575 -0.8643 32 1 8.0217 3.1546 0.9156 33 1 12.3759 4.7028 0.0475 34 1 4.4630 -2.7210 -0.8832 35 1 1.3146 -2.7175 0.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273081632.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:03 Heat of formation + Delta-G solvation = -105.488831 kcal Electronic energy + Delta-G solvation = -19310.749356 eV Core-core repulsion = 16080.949721 eV Total energy + Delta-G solvation = -3229.799635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.74698 -38.97459 -37.08175 -36.72136 -34.95422 -33.01481 -32.41314 -30.18082 -29.44817 -27.66414 -24.88371 -22.82815 -22.56525 -20.86382 -20.45615 -18.62792 -18.17423 -16.98836 -16.78284 -16.57802 -15.71119 -15.15654 -14.90564 -14.77817 -14.19883 -14.13091 -13.81189 -13.43787 -13.26192 -12.98404 -12.69925 -12.59377 -12.11551 -11.86625 -11.53573 -11.41145 -11.21518 -10.60970 -10.41427 -10.26989 -9.97685 -9.49805 -9.30609 -8.96337 -8.82710 -8.64814 -8.51105 -6.12264 -4.12518 0.55718 0.87450 2.76436 3.23920 3.31274 3.32542 3.41371 3.60244 3.85641 4.13310 4.36319 4.45963 4.63995 4.80033 4.99525 5.15764 5.20488 5.22440 5.31439 5.48386 5.70917 5.89234 5.90409 6.07820 6.12100 6.18924 6.33507 6.53893 6.71055 7.11191 7.20943 7.25407 7.63360 7.64929 7.85917 8.42064 8.53076 8.92193 9.47636 11.00813 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.003887 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.904175 B = 7202.432876 C = 7995.328487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.076 4.076 5 C -0.151 4.151 6 C 0.549 3.451 7 O -0.526 6.526 8 N -0.722 5.722 9 C 0.131 3.869 10 C -0.022 4.022 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.148 3.852 20 O -0.470 6.470 21 C 0.065 3.935 22 O -0.487 6.487 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.394 0.606 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.397 0.603 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.101 -5.688 -0.151 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.155 4.155 6 C 0.335 3.665 7 O -0.404 6.404 8 N -0.373 5.373 9 C 0.009 3.991 10 C -0.060 4.060 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.100 3.900 20 O -0.281 6.281 21 C 0.020 3.980 22 O -0.297 6.297 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -24.437 -6.229 -0.164 25.219 hybrid contribution -0.493 1.279 0.057 1.372 sum -24.931 -4.950 -0.106 25.417 Atomic orbital electron populations 1.20753 0.90145 1.03588 1.02672 1.20308 0.97024 0.92067 0.98453 1.20891 0.93746 0.97498 1.02129 1.21322 0.94308 0.97125 0.96720 1.20507 0.94429 0.93385 1.07175 1.17978 0.86261 0.84505 0.77792 1.90797 1.69108 1.31262 1.49206 1.46266 1.09285 1.07564 1.74154 1.21537 0.75608 1.00197 1.01787 1.19800 0.98101 0.91262 0.96836 1.20915 0.88639 0.94908 1.51687 0.90578 1.25006 0.94779 0.99150 0.94366 1.69907 1.06491 1.26873 1.50375 0.86747 0.80292 0.83493 0.78515 1.20201 1.21244 1.19099 1.18848 0.88599 0.85734 0.96808 1.84704 1.75637 1.34221 1.33551 1.18526 0.88570 0.85843 1.05078 1.84775 1.75443 1.35805 1.33628 0.90848 0.91014 0.90577 0.84733 0.84707 0.77162 0.91777 0.91777 0.95977 0.96414 0.92529 0.74498 0.75398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.78 36.01 0.35 -0.38 16 2 C -0.08 -0.71 5.89 -104.44 -0.62 -1.33 16 3 C -0.12 -1.11 9.67 -39.65 -0.38 -1.49 16 4 C -0.08 -0.81 9.53 -39.18 -0.37 -1.19 16 5 C -0.15 -2.09 5.88 -104.87 -0.62 -2.71 16 6 C 0.55 9.52 7.76 -12.46 -0.10 9.42 16 7 O -0.53 -10.94 15.15 -16.61 -0.25 -11.20 16 8 N -0.72 -12.17 5.51 -61.35 -0.34 -12.51 16 9 C 0.13 2.69 5.61 -4.04 -0.02 2.67 16 10 C -0.02 -0.51 4.15 -27.89 -0.12 -0.62 16 11 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 12 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 13 C 0.07 1.97 5.47 -17.81 -0.10 1.87 16 14 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 15 Si 0.88 20.90 27.47 -169.99 -4.67 16.24 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 19 C 0.15 1.97 6.73 -38.58 -0.26 1.71 16 20 O -0.47 -6.63 11.36 -47.54 -0.54 -7.17 16 21 C 0.07 0.71 6.68 -39.16 -0.26 0.45 16 22 O -0.49 -4.58 12.30 -34.24 -0.42 -5.00 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.08 0.50 7.51 -51.93 -0.39 0.11 16 26 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 27 H 0.14 1.19 6.40 -52.49 -0.34 0.86 16 28 H 0.39 5.47 6.50 -40.82 -0.27 5.20 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 32 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.40 4.34 9.06 45.56 0.41 4.75 16 35 H 0.39 2.14 9.06 45.56 0.41 2.55 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -34.92 303.50 -6.33 -41.25 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -2.63 Total: 6.96 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.82 Total: -6.59 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.44 Total: -39.06 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.21 Total: -23.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.92 -6.33 -41.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273081632.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.241 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds