Wall clock time and date at job start Mon Mar 30 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34507 * 125.78688 * 2 1 4 4 C 1.41385 * 106.83665 * 179.74782 * 3 2 1 5 5 C 1.34509 * 106.84102 * 0.37375 * 4 3 2 6 6 C 1.50702 * 125.79012 * 179.88539 * 5 4 3 7 7 H 1.09004 * 109.68043 * 6.85134 * 6 5 4 8 8 C 1.53300 * 109.68411 * 246.29311 * 6 5 4 9 9 O 1.42963 * 109.22046 * 187.97579 * 8 6 5 10 10 C 1.42960 * 114.16970 * 62.58260 * 9 8 6 11 11 C 1.53719 * 109.14552 * 297.28762 * 10 9 8 12 12 N 1.47146 * 108.16125 * 52.53597 * 11 10 9 13 13 C 1.34780 * 120.98069 * 129.43604 * 12 11 10 14 14 O 1.21691 * 120.00033 * 175.87959 * 13 12 11 15 15 C 1.46370 * 120.00107 * 355.87250 * 13 12 11 16 16 H 1.08004 * 119.99853 * 9.24227 * 15 13 12 17 17 C 1.40044 * 120.00203 * 189.23761 * 15 13 12 18 18 N 1.30674 * 120.00103 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00136 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47309 * 59.99476 * 19 17 15 21 21 H 1.48500 * 109.47315 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47084 * 299.99836 * 19 17 15 23 23 O 1.34301 * 108.42411 * 359.62703 * 5 4 3 24 24 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46978 * 300.00049 * 1 2 3 26 26 H 1.09007 * 109.46810 * 60.00227 * 1 2 3 27 27 H 1.07997 * 126.58650 * 0.02562 * 3 2 1 28 28 H 1.08004 * 126.58088 * 180.23646 * 4 3 2 29 29 H 1.08999 * 109.51206 * 307.89782 * 8 6 5 30 30 H 1.08994 * 109.51141 * 68.05146 * 8 6 5 31 31 H 1.09001 * 109.51347 * 57.33765 * 10 9 8 32 32 H 1.08999 * 109.51260 * 177.49756 * 10 9 8 33 33 H 1.09004 * 109.83505 * 292.85713 * 11 10 9 34 34 H 1.09001 * 109.74271 * 172.16638 * 11 10 9 35 35 H 0.96997 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5814 -0.7122 0.0008 6 6 4.7705 -1.6379 0.0018 7 1 5.6857 -1.0597 0.1298 8 6 4.8264 -2.4082 -1.3224 9 8 5.8409 -3.4121 -1.2405 10 6 5.6026 -4.4048 -0.2397 11 6 5.5900 -3.7337 1.1432 12 7 4.6411 -2.6100 1.0990 13 6 3.6850 -2.4719 2.0390 14 8 2.9577 -1.4963 2.0284 15 6 3.5215 -3.4955 3.0724 16 1 4.2549 -4.2817 3.1746 17 6 2.4141 -3.4553 3.9287 18 7 1.5265 -2.5043 3.8048 19 14 2.2057 -4.7612 5.2481 20 1 3.3715 -4.7267 6.1673 21 1 0.9620 -4.4962 6.0149 22 1 2.1178 -6.0996 4.6104 23 8 2.2924 -1.0895 0.0004 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.9666 2.1204 0.0004 28 1 4.5212 1.2432 0.0111 29 1 3.8618 -2.8798 -1.5103 30 1 5.0602 -1.7197 -2.1344 31 1 4.6408 -4.8836 -0.4236 32 1 6.3948 -5.1527 -0.2728 33 1 6.5866 -3.3633 1.3836 34 1 5.2728 -4.4527 1.8985 35 1 0.7597 -2.4764 4.3982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274223333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:00 Heat of formation + Delta-G solvation = -47.227663 kcal Electronic energy + Delta-G solvation = -21266.391054 eV Core-core repulsion = 18039.117813 eV Total energy + Delta-G solvation = -3227.273241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.57132 -39.03452 -36.72168 -33.64143 -32.62547 -32.16273 -32.08288 -30.10525 -27.52097 -26.01352 -25.44302 -23.00640 -21.57976 -20.72287 -19.78292 -18.79967 -16.98263 -16.02168 -15.97991 -15.42772 -15.04133 -14.87120 -14.52532 -14.29842 -14.11298 -13.53846 -13.04664 -12.59285 -12.46165 -12.36938 -11.82076 -11.74876 -11.65743 -11.49742 -11.30713 -11.06049 -11.01316 -10.86971 -10.37120 -10.31418 -10.07805 -9.61354 -8.93602 -8.81897 -8.06257 -7.33890 -6.87819 -6.21135 -4.71719 2.75062 3.09998 3.15595 3.16522 3.49995 3.83727 4.04219 4.17842 4.36997 4.49279 5.17744 5.38226 5.43793 5.48767 5.57363 5.67791 5.76623 5.86757 5.92065 5.94791 6.00125 6.02100 6.13160 6.26058 6.30469 6.44884 6.68866 6.78775 7.07190 7.34063 7.36117 7.42142 7.52817 7.96578 8.18345 8.30203 8.94498 9.28690 10.47778 10.66079 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.010122 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.174169 B = 2765.542508 C = 4232.038698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.003 4.003 3 C -0.222 4.222 4 C -0.237 4.237 5 C 0.055 3.945 6 C 0.194 3.806 7 H 0.085 0.915 8 C 0.057 3.943 9 O -0.386 6.386 10 C 0.044 3.956 11 C 0.089 3.911 12 N -0.644 5.644 13 C 0.556 3.444 14 O -0.534 6.534 15 C -0.543 4.543 16 H 0.072 0.928 17 C 0.090 3.910 18 N -0.763 5.763 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 O -0.139 6.139 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -0.340 -7.215 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.054 4.054 3 C -0.242 4.242 4 C -0.257 4.257 5 C 0.003 3.997 6 C 0.089 3.911 7 H 0.102 0.898 8 C -0.021 4.021 9 O -0.304 6.304 10 C -0.034 4.034 11 C -0.035 4.035 12 N -0.386 5.386 13 C 0.362 3.638 14 O -0.414 6.414 15 C -0.579 4.579 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.392 5.392 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.193 1.193 23 O -0.034 6.034 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.361 -0.016 -7.245 7.620 hybrid contribution -0.125 -0.443 1.108 1.200 sum 2.236 -0.459 -6.137 6.548 Atomic orbital electron populations 1.20110 0.86752 1.03250 1.01959 1.21935 0.93348 0.84698 1.05450 1.21098 0.92845 0.98181 1.12029 1.21016 0.97428 0.93388 1.13865 1.21290 0.83196 0.93070 1.02107 1.19923 0.92389 0.89594 0.89203 0.89756 1.22968 0.91998 0.90549 0.96538 1.87862 1.47105 1.38761 1.56674 1.23149 1.01458 0.90395 0.88389 1.22219 0.93139 0.90780 0.97372 1.48630 1.36013 1.26321 1.27592 1.18344 0.77804 0.87241 0.80406 1.90619 1.45320 1.32088 1.73404 1.20820 1.09512 1.11734 1.15831 0.91047 1.25676 0.94908 0.95461 0.97003 1.69985 1.08355 1.28051 1.32774 0.86455 0.78221 0.81384 0.80864 1.19249 1.20544 1.19285 1.84072 1.15762 1.34061 1.69521 0.91226 0.90417 0.91188 0.85234 0.85268 0.92551 0.88394 0.92745 0.88667 0.92907 0.87780 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.42 36.01 0.38 -0.73 16 2 C 0.00 -0.06 7.05 -35.62 -0.25 -0.32 16 3 C -0.22 -4.56 10.81 -39.70 -0.43 -4.99 16 4 C -0.24 -4.99 10.79 -39.70 -0.43 -5.42 16 5 C 0.06 1.24 3.84 -35.63 -0.14 1.11 16 6 C 0.19 3.94 3.55 -68.57 -0.24 3.70 16 7 H 0.08 1.61 8.11 -51.93 -0.42 1.18 16 8 C 0.06 0.99 6.27 37.31 0.23 1.23 16 9 O -0.39 -6.51 10.74 -35.23 -0.38 -6.89 16 10 C 0.04 0.69 7.00 37.53 0.26 0.95 16 11 C 0.09 1.63 6.58 -3.32 -0.02 1.61 16 12 N -0.64 -14.65 3.01 -167.44 -0.50 -15.16 16 13 C 0.56 15.39 7.36 -12.99 -0.10 15.29 16 14 O -0.53 -16.23 10.36 -19.71 -0.20 -16.44 16 15 C -0.54 -14.77 8.83 -35.64 -0.31 -15.09 16 16 H 0.07 1.76 5.76 -52.48 -0.30 1.46 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 18 N -0.76 -22.16 11.87 55.55 0.66 -21.50 16 19 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 O -0.14 -3.42 8.33 -19.20 -0.16 -3.58 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 28 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.94 5.42 -51.93 -0.28 1.65 16 35 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -33.81 292.02 -6.72 -40.53 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.37 Total: 4.30 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.14 Total: -0.32 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.15 Total: -36.66 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.74 Total: -26.91 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.81 -6.72 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274223333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.694 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds