Wall clock time and date at job start Mon Mar 30 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47465 * 2 1 4 4 O 1.42904 * 109.47065 * 239.99580 * 2 1 3 5 5 C 1.50697 * 109.46977 * 120.00104 * 2 1 3 6 6 O 1.21287 * 119.99855 * 334.99701 * 5 2 1 7 7 N 1.34774 * 120.00446 * 154.99844 * 5 2 1 8 8 C 1.39924 * 120.00477 * 174.78804 * 7 5 2 9 9 C 1.38959 * 120.03386 * 326.32278 * 8 7 5 10 10 C 1.38162 * 120.06814 * 180.02562 * 9 8 7 11 11 C 1.38166 * 120.13720 * 359.70118 * 10 9 8 12 12 C 1.38916 * 120.06910 * 0.55615 * 11 10 9 13 13 O 1.35746 * 120.03137 * 179.74159 * 12 11 10 14 14 C 1.34830 * 116.99962 * 173.82273 * 13 12 11 15 15 H 1.07998 * 120.00084 * 354.59283 * 14 13 12 16 16 C 1.38652 * 120.00217 * 174.59572 * 14 13 12 17 17 N 1.31564 * 119.99891 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00138 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46926 * 90.00157 * 18 16 14 20 20 H 1.48503 * 109.47198 * 209.99802 * 18 16 14 21 21 H 1.48497 * 109.47248 * 330.00053 * 18 16 14 22 22 C 1.38716 * 120.03749 * 146.34612 * 8 7 5 23 23 H 1.08999 * 109.47510 * 300.00331 * 1 2 3 24 24 H 1.09003 * 109.46996 * 60.00190 * 1 2 3 25 25 H 1.09003 * 109.47683 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47166 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47330 * 299.99710 * 3 2 1 28 28 H 1.09000 * 109.47543 * 59.99474 * 3 2 1 29 29 H 0.96699 * 114.00204 * 300.00115 * 4 2 1 30 30 H 0.97000 * 119.99755 * 354.78821 * 7 5 2 31 31 H 1.08001 * 119.96694 * 0.02673 * 9 8 7 32 32 H 1.07995 * 119.93047 * 179.97438 * 10 9 8 33 33 H 1.07998 * 119.96440 * 180.29836 * 11 10 9 34 34 H 0.97002 * 119.99929 * 179.97438 * 17 16 14 35 35 H 1.07993 * 120.06831 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0322 -0.7104 1.2304 6 8 1.3368 -0.7705 2.2223 7 7 3.2541 -1.2790 1.2287 8 6 3.7651 -1.8430 2.4029 9 6 3.4552 -1.2822 3.6360 10 6 3.9597 -1.8382 4.7958 11 6 4.7686 -2.9566 4.7341 12 6 5.0864 -3.5188 3.5042 13 8 5.8855 -4.6145 3.4442 14 6 6.0510 -5.1858 2.2342 15 1 5.4906 -4.8239 1.3849 16 6 6.9406 -6.2381 2.0802 17 7 7.6237 -6.6788 3.1146 18 14 7.1694 -7.0301 0.4039 19 1 8.2549 -6.3312 -0.3298 20 1 7.5302 -8.4602 0.5771 21 1 5.9050 -6.9287 -0.3683 22 6 4.5819 -2.9623 2.3374 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.7209 -1.5953 -1.2329 30 1 3.7794 -1.2973 0.4135 31 1 2.8192 -0.4108 3.6878 32 1 3.7178 -1.4003 5.7529 33 1 5.1575 -3.3918 5.6428 34 1 8.2458 -7.4152 3.0070 35 1 4.8249 -3.3995 1.3803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277022113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:35 Heat of formation + Delta-G solvation = -113.550490 kcal Electronic energy + Delta-G solvation = -19775.914036 eV Core-core repulsion = 16545.764821 eV Total energy + Delta-G solvation = -3230.149214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.87076 -40.55947 -38.60764 -37.79499 -35.69678 -34.23823 -33.12034 -31.05530 -30.26554 -28.32153 -27.35552 -25.26486 -23.53723 -22.69709 -21.16872 -19.99097 -19.47502 -18.99409 -17.30096 -16.95461 -16.69712 -16.59205 -16.11386 -15.90851 -15.62955 -15.47570 -15.01851 -14.60268 -14.22034 -13.70648 -13.55962 -13.40336 -13.30909 -13.18321 -12.95521 -12.79035 -12.71137 -12.58133 -12.41969 -12.11357 -11.71716 -11.49816 -11.27786 -10.78077 -10.55915 -9.39681 -8.91682 -8.47446 -6.16535 0.33032 0.65782 1.35990 1.41964 1.48190 1.53336 1.90982 2.17564 2.81086 3.07312 3.14900 3.41079 3.47644 3.83524 3.90457 4.09986 4.29127 4.41360 4.59562 4.67265 4.69425 4.73545 4.75937 4.88231 4.99377 5.09309 5.14348 5.19125 5.34492 5.42852 5.62683 5.64121 6.00196 6.10932 6.30090 6.57545 6.96722 7.00217 7.75555 8.75475 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.005129 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.576945 B = 5458.046025 C = 6504.734476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.139 4.139 4 O -0.553 6.553 5 C 0.484 3.516 6 O -0.548 6.548 7 N -0.655 5.655 8 C 0.182 3.818 9 C -0.200 4.200 10 C -0.051 4.051 11 C -0.213 4.213 12 C 0.134 3.866 13 O -0.225 6.225 14 C -0.414 4.414 15 H 0.102 0.898 16 C -0.020 4.020 17 N -0.919 5.919 18 Si 1.018 2.982 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.253 1.253 22 C -0.259 4.259 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.395 0.605 30 H 0.423 0.577 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 13.803 -9.351 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 C -0.196 4.196 4 O -0.361 6.361 5 C 0.272 3.728 6 O -0.424 6.424 7 N -0.301 5.301 8 C 0.088 3.912 9 C -0.221 4.221 10 C -0.070 4.070 11 C -0.233 4.233 12 C 0.083 3.917 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.119 0.881 16 C -0.218 4.218 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.176 1.176 22 C -0.281 4.281 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.262 0.738 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.317 14.104 -8.591 20.020 hybrid contribution 0.457 -1.331 -0.513 1.498 sum -10.860 12.774 -9.104 19.078 Atomic orbital electron populations 1.22297 0.91731 1.03574 1.04378 1.21445 0.95505 0.94078 0.80457 1.21814 1.02350 0.90672 1.04750 1.86567 1.77108 1.30701 1.41735 1.22393 0.80347 0.78264 0.91776 1.90712 1.56552 1.58453 1.36712 1.43559 1.18323 1.56337 1.11835 1.17527 0.94669 0.91833 0.87210 1.20850 1.06532 1.03576 0.91132 1.20933 0.93737 0.93274 0.99018 1.20501 1.06516 1.01052 0.95223 1.19620 0.90398 0.87151 0.94579 1.83984 1.59002 1.36531 1.33636 1.21789 1.25659 1.15706 0.85870 0.88099 1.26584 0.94540 0.96775 1.03933 1.70186 1.25961 1.26960 1.32549 0.84594 0.79686 0.77322 0.74666 1.18635 1.19743 1.17618 1.20848 1.08729 0.99649 0.98854 0.90908 0.88613 0.92194 0.91541 0.88457 0.90035 0.75449 0.73814 0.85158 0.82694 0.86158 0.91780 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.35 71.98 0.60 -1.97 16 2 C 0.13 2.36 1.33 -11.55 -0.02 2.34 16 3 C -0.14 -2.10 8.82 71.98 0.64 -1.47 16 4 O -0.55 -9.00 12.24 -148.98 -1.82 -10.82 16 5 C 0.48 12.95 6.43 87.66 0.56 13.52 16 6 O -0.55 -18.41 13.80 -3.05 -0.04 -18.45 16 7 N -0.65 -18.75 5.28 -303.56 -1.60 -20.35 16 8 C 0.18 6.78 6.27 38.14 0.24 7.02 16 9 C -0.20 -7.31 8.65 22.42 0.19 -7.12 16 10 C -0.05 -1.84 10.03 22.23 0.22 -1.62 16 11 C -0.21 -9.25 9.99 22.42 0.22 -9.02 16 12 C 0.13 6.69 6.64 22.56 0.15 6.84 16 13 O -0.23 -13.44 9.76 -22.69 -0.22 -13.66 16 14 C -0.41 -23.71 9.44 67.92 0.64 -23.07 16 15 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 16 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 17 N -0.92 -55.75 13.67 21.61 0.30 -55.45 16 18 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 C -0.26 -11.31 9.04 22.51 0.20 -11.11 16 23 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.40 4.53 9.04 -74.06 -0.67 3.86 16 30 H 0.42 10.12 8.18 -92.71 -0.76 9.36 16 31 H 0.13 4.50 6.43 -2.91 -0.02 4.48 16 32 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.13 5.53 5.72 -2.91 -0.02 5.51 16 Total: -1.00 -73.31 303.79 2.47 -70.85 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.29 Total: 30.33 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.12 Total: -26.34 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.31 Total: -75.80 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -2.09 Total: -42.94 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.31 2.47 -70.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277022113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.703 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds