Wall clock time and date at job start Mon Mar 30 2020 00:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47185 * 346.37847 * 3 2 1 5 5 C 1.36939 * 119.99825 * 268.29189 * 4 3 2 6 6 H 1.08000 * 120.00378 * 322.10763 * 5 4 3 7 7 C 1.38817 * 119.99782 * 142.09539 * 5 4 3 8 8 N 1.31615 * 119.99838 * 157.13807 * 7 5 4 9 9 Si 1.86797 * 120.00025 * 337.14459 * 7 5 4 10 10 H 1.48494 * 109.47266 * 95.68507 * 9 7 5 11 11 H 1.48504 * 109.47112 * 215.68791 * 9 7 5 12 12 H 1.48500 * 109.47089 * 335.68475 * 9 7 5 13 13 C 1.46494 * 120.00124 * 88.57693 * 4 3 2 14 14 C 1.50694 * 109.47840 * 89.99855 * 13 4 3 15 15 C 1.38234 * 119.99854 * 269.73039 * 14 13 4 16 16 C 1.38236 * 119.99913 * 179.76444 * 15 14 13 17 17 C 1.38234 * 120.00334 * 0.47932 * 16 15 14 18 18 C 1.50692 * 120.00476 * 179.77052 * 17 16 15 19 19 F 1.39899 * 109.47358 * 120.02059 * 18 17 16 20 20 F 1.39902 * 109.47360 * 240.02290 * 18 17 16 21 21 C 1.38236 * 119.99690 * 359.79319 * 17 16 15 22 22 C 1.38237 * 120.00032 * 359.95496 * 21 17 16 23 23 H 4.40637 * 5.51484 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.47152 * 226.37375 * 3 2 1 25 25 H 1.09011 * 109.46842 * 106.37852 * 3 2 1 26 26 H 0.96992 * 119.99929 * 180.02562 * 8 7 5 27 27 H 1.09008 * 109.47111 * 209.99738 * 13 4 3 28 28 H 1.09003 * 109.47077 * 329.99053 * 13 4 3 29 29 H 1.08000 * 120.00218 * 359.97438 * 15 14 13 30 30 H 1.08009 * 119.99873 * 180.25093 * 16 15 14 31 31 H 1.09004 * 109.46926 * 0.02562 * 18 17 16 32 32 H 1.08004 * 120.00261 * 179.97438 * 21 17 16 33 33 H 1.07998 * 120.00158 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.3415 0.3253 5 6 3.3966 -1.6781 1.6266 6 1 3.8380 -0.9525 2.2938 7 6 3.0942 -2.9518 2.0883 8 7 3.7188 -3.4357 3.1409 9 14 1.8010 -3.9791 1.2155 10 1 2.4628 -4.8883 0.2457 11 1 1.0500 -4.7819 2.2138 12 1 0.8622 -3.0835 0.4932 13 6 3.3498 -2.3214 -0.7422 14 6 4.7623 -2.2051 -1.2542 15 6 5.0492 -1.3519 -2.3033 16 6 6.3458 -1.2416 -2.7697 17 6 7.3538 -1.9918 -2.1937 18 6 8.7663 -1.8754 -2.7055 19 9 9.6027 -1.4406 -1.6718 20 9 9.2010 -3.1240 -3.1631 21 6 7.0660 -2.8493 -1.1483 22 6 5.7703 -2.9558 -0.6784 23 1 -1.0499 -0.0004 0.0003 24 1 3.0090 0.7099 0.7439 25 1 3.0091 0.2906 -0.9861 26 1 3.5078 -4.3258 3.4633 27 1 3.1865 -3.3259 -0.3516 28 1 2.6511 -2.1305 -1.5568 29 1 4.2609 -0.7690 -2.7563 30 1 6.5706 -0.5719 -3.5868 31 1 8.7978 -1.1571 -3.5248 32 1 7.8534 -3.4358 -0.6984 33 1 5.5455 -3.6253 0.1386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281463665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:18 Heat of formation + Delta-G solvation = 2.407903 kcal Electronic energy + Delta-G solvation = -19374.023317 eV Core-core repulsion = 16037.814920 eV Total energy + Delta-G solvation = -3336.208397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.88032 -46.87205 -39.07986 -36.32130 -32.81522 -32.24964 -30.93071 -30.63381 -27.68917 -26.35767 -24.39588 -22.45778 -21.81907 -20.65084 -17.56017 -17.39071 -17.18860 -17.10297 -16.94705 -15.58497 -14.93552 -14.67991 -14.26724 -14.09475 -13.82045 -13.61988 -13.25918 -13.23884 -13.00741 -12.63754 -12.50475 -12.20636 -11.89085 -11.67694 -11.27507 -10.85865 -10.74337 -10.55462 -10.05627 -9.78723 -9.75336 -9.42747 -8.67720 -8.58938 -8.44849 -7.13913 -6.14269 -3.58086 1.46266 1.74122 3.20494 3.39093 3.43879 3.47987 3.53533 3.84485 4.00815 4.26023 4.40328 4.67425 5.03545 5.09884 5.16620 5.16940 5.24138 5.29924 5.51628 5.73928 5.84194 6.01497 6.10581 6.17972 6.33309 6.38975 6.46528 6.60044 6.66690 6.76435 7.12412 7.30257 7.86730 8.21542 8.34121 8.78207 9.52884 9.89442 10.99859 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.005884 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.516080 B = 4757.541369 C = 5391.827501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.168 4.168 3 C 0.240 3.760 4 N -0.585 5.585 5 C -0.273 4.273 6 H 0.083 0.917 7 C 0.044 3.956 8 N -0.888 5.888 9 Si 0.865 3.135 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.262 1.262 13 C 0.164 3.836 14 C -0.055 4.055 15 C -0.122 4.122 16 C -0.093 4.093 17 C -0.190 4.190 18 C 0.316 3.684 19 F -0.203 7.203 20 F -0.205 7.205 21 C -0.081 4.081 22 C -0.092 4.092 23 H 0.203 0.797 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.266 0.734 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 3.937 -12.873 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.171 4.171 3 C 0.115 3.885 4 N -0.305 5.305 5 C -0.401 4.401 6 H 0.101 0.899 7 C -0.158 4.158 8 N -0.528 5.528 9 Si 0.695 3.305 10 H -0.211 1.211 11 H -0.226 1.226 12 H -0.187 1.187 13 C 0.039 3.961 14 C -0.058 4.058 15 C -0.141 4.141 16 C -0.111 4.111 17 C -0.191 4.191 18 C 0.262 3.738 19 F -0.184 7.184 20 F -0.186 7.186 21 C -0.099 4.099 22 C -0.111 4.111 23 H 0.220 0.780 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.509 3.781 -12.682 13.981 hybrid contribution -0.910 -0.808 -0.157 1.227 sum 3.600 2.973 -12.839 13.661 Atomic orbital electron populations 1.24703 0.95813 1.03021 1.03972 1.25117 0.96184 0.98123 0.97652 1.18210 0.81732 0.88950 0.99616 1.44107 1.73049 1.09988 1.03325 1.18791 1.36297 0.99183 0.85833 0.89915 1.25460 0.97070 0.97632 0.95604 1.69865 1.39737 1.17104 1.26059 0.87114 0.84307 0.80233 0.78894 1.21102 1.22550 1.18652 1.20334 0.89670 0.95058 0.91031 1.21021 0.98785 0.93450 0.92541 1.20957 0.95948 0.99571 0.97632 1.20731 0.92648 0.98378 0.99383 1.20125 0.93807 1.03503 1.01684 1.20368 0.85038 0.81537 0.86835 1.93004 1.73841 1.89544 1.62007 1.92990 1.90965 1.45455 1.89220 1.20920 0.97219 0.96888 0.94888 1.21189 0.91687 0.99397 0.98839 0.77968 0.90119 0.91584 0.92432 0.91642 0.92793 0.86060 0.86163 0.87043 0.86157 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.64 19.25 29.55 0.57 -4.07 16 2 C -0.17 -3.30 13.68 -37.12 -0.51 -3.81 16 3 C 0.24 4.58 6.14 -6.83 -0.04 4.54 16 4 N -0.59 -13.09 2.00 -177.95 -0.36 -13.45 16 5 C -0.27 -7.23 9.89 -15.06 -0.15 -7.38 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.04 1.22 5.29 -17.43 -0.09 1.13 16 8 N -0.89 -25.89 13.97 55.49 0.78 -25.11 16 9 Si 0.87 21.38 25.10 -169.99 -4.27 17.12 16 10 H -0.28 -6.72 6.68 56.52 0.38 -6.34 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.16 3.36 4.65 -5.20 -0.02 3.33 16 14 C -0.05 -1.01 5.46 -104.63 -0.57 -1.58 16 15 C -0.12 -1.85 9.70 -39.58 -0.38 -2.24 16 16 C -0.09 -1.25 9.67 -39.58 -0.38 -1.63 16 17 C -0.19 -2.79 5.37 -104.63 -0.56 -3.35 16 18 C 0.32 3.92 5.45 36.00 0.20 4.12 16 19 F -0.20 -2.91 17.26 2.25 0.04 -2.87 16 20 F -0.21 -2.81 17.26 2.25 0.04 -2.78 16 21 C -0.08 -1.36 9.60 -39.58 -0.38 -1.74 16 22 C -0.09 -1.76 9.70 -39.58 -0.38 -2.14 16 23 H 0.20 2.88 7.80 -54.10 -0.42 2.46 16 24 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 25 H 0.07 1.06 8.08 -51.92 -0.42 0.64 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.07 1.48 3.33 -51.92 -0.17 1.30 16 28 H 0.05 0.99 8.01 -51.93 -0.42 0.58 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.12 1.18 7.95 -52.48 -0.42 0.76 16 31 H 0.11 0.95 7.88 -51.93 -0.41 0.54 16 32 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 33 H 0.13 2.76 8.06 -52.49 -0.42 2.33 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -30.16 301.97 -5.46 -35.62 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.52 Total: 1.76 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.71 Total: -14.83 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.42 Total: -38.56 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.08 Total: -5.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.27 Total: 17.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.16 -5.46 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281463665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds