Wall clock time and date at job start Sun Mar 29 2020 23:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86792 * 120.00021 * 2 1 4 4 H 1.48509 * 109.47195 * 239.99920 * 3 2 1 5 5 H 1.48505 * 109.47502 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47411 * 119.99854 * 3 2 1 7 7 C 1.40138 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.41769 * 119.99575 * 0.02562 * 7 2 1 10 10 O 1.21772 * 120.00572 * 359.97438 * 9 7 2 11 11 N 1.34785 * 119.99874 * 179.97438 * 9 7 2 12 12 C 1.39519 * 119.99980 * 185.27579 * 11 9 7 13 13 C 1.39104 * 120.02800 * 33.44544 * 12 11 9 14 14 C 1.37965 * 119.96969 * 180.02562 * 13 12 11 15 15 C 1.38870 * 120.02656 * 359.97438 * 14 13 12 16 16 O 1.35903 * 119.96848 * 179.97438 * 15 14 13 17 17 C 1.42906 * 117.00038 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46919 * 179.97438 * 17 16 15 19 19 C 1.53007 * 109.46737 * 179.97438 * 18 17 16 20 20 O 1.42892 * 109.46962 * 180.02562 * 19 18 17 21 21 C 1.38857 * 120.05846 * 0.25661 * 15 14 13 22 22 C 1.37975 * 120.02997 * 359.48863 * 21 15 14 23 23 H 0.96999 * 119.99609 * 0.02562 * 1 2 3 24 24 H 0.96990 * 119.99693 * 5.27611 * 11 9 7 25 25 H 1.07998 * 120.01537 * 359.97438 * 13 12 11 26 26 H 1.08002 * 119.98566 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.46771 * 300.00058 * 17 16 15 28 28 H 1.09005 * 109.46622 * 59.99748 * 17 16 15 29 29 H 1.08997 * 109.47342 * 299.99567 * 18 17 16 30 30 H 1.08997 * 109.47018 * 60.00657 * 18 17 16 31 31 H 1.08998 * 109.46929 * 300.00464 * 19 18 17 32 32 H 1.09005 * 109.46646 * 60.00265 * 19 18 17 33 33 H 0.96704 * 114.00163 * 180.02562 * 20 19 18 34 34 H 1.08007 * 119.98584 * 179.72784 * 21 15 14 35 35 H 1.07994 * 120.01575 * 180.23180 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2126 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2136 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2981 -2.4413 0.0005 10 8 0.0804 -2.4414 0.0005 11 7 1.9720 -3.6086 0.0005 12 6 1.2788 -4.8143 -0.1106 13 6 0.1174 -4.8818 -0.8731 14 6 -0.5675 -6.0745 -0.9817 15 6 -0.0975 -7.2075 -0.3306 16 8 -0.7733 -8.3817 -0.4380 17 6 -0.2331 -9.5071 0.2575 18 6 -1.1236 -10.7285 0.0206 19 6 -0.5448 -11.9336 0.7647 20 8 -1.3761 -13.0745 0.5430 21 6 1.0591 -7.1403 0.4348 22 6 1.7488 -5.9500 0.5408 23 1 -0.4849 0.8401 -0.0004 24 1 2.9388 -3.6104 0.0778 25 1 -0.2486 -4.0007 -1.3793 26 1 -1.4695 -6.1271 -1.5734 27 1 0.7722 -9.7131 -0.1102 28 1 -0.1921 -9.2892 1.3248 29 1 -2.1286 -10.5223 0.3886 30 1 -1.1649 -10.9465 -1.0466 31 1 0.4602 -12.1396 0.3964 32 1 -0.5031 -11.7158 1.8320 33 1 -1.0690 -13.8771 0.9864 34 1 1.4212 -8.0211 0.9443 35 1 2.6503 -5.8989 1.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286632256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:26 Heat of formation + Delta-G solvation = -106.019137 kcal Electronic energy + Delta-G solvation = -18872.813864 eV Core-core repulsion = 15642.991233 eV Total energy + Delta-G solvation = -3229.822630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80923 -38.39436 -37.36784 -36.26878 -33.39717 -32.63897 -32.20032 -30.42714 -28.37663 -26.40418 -25.59311 -22.71040 -21.82492 -21.34335 -19.74219 -17.98581 -17.61618 -17.47637 -16.49450 -16.12940 -15.59732 -15.18508 -14.99186 -14.31157 -14.05529 -13.80000 -13.26374 -13.02344 -12.85169 -12.65100 -12.36526 -12.13539 -11.70239 -11.62399 -11.40020 -11.28719 -11.10302 -10.67714 -10.61726 -10.37650 -10.34936 -10.31918 -9.09831 -8.69112 -8.46803 -7.70960 -6.77978 -6.36766 -4.89656 1.91404 2.05864 3.06914 3.12330 3.14164 3.16941 3.98107 4.16541 4.23971 4.53275 4.61163 4.73211 4.81030 4.90434 5.07839 5.14649 5.22476 5.35099 5.36645 5.72094 5.78693 5.81803 5.93759 6.00663 6.28366 6.54674 6.64552 6.79572 7.10910 7.22435 7.23266 7.30581 7.75934 7.89033 8.05210 8.24722 8.80647 9.31384 10.39366 10.60234 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.074335 B = 0.003007 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.584945 B = 9308.534776 C = 9546.725503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.544 3.456 10 O -0.568 6.568 11 N -0.703 5.703 12 C 0.165 3.835 13 C -0.091 4.091 14 C -0.126 4.126 15 C 0.076 3.924 16 O -0.319 6.319 17 C 0.066 3.934 18 C -0.122 4.122 19 C 0.080 3.920 20 O -0.573 6.573 21 C -0.185 4.185 22 C -0.144 4.144 23 H 0.273 0.727 24 H 0.391 0.609 25 H 0.145 0.855 26 H 0.124 0.876 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.381 0.619 34 H 0.118 0.882 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -17.601 1.424 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.353 3.647 10 O -0.451 6.451 11 N -0.347 5.347 12 C 0.066 3.934 13 C -0.112 4.112 14 C -0.146 4.146 15 C 0.031 3.969 16 O -0.234 6.234 17 C -0.009 4.009 18 C -0.159 4.159 19 C 0.003 3.997 20 O -0.379 6.379 21 C -0.205 4.205 22 C -0.165 4.165 23 H 0.084 0.916 24 H 0.224 0.776 25 H 0.163 0.837 26 H 0.142 0.858 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.229 0.771 34 H 0.136 0.864 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.690 -16.969 0.957 17.079 hybrid contribution 1.561 0.358 0.679 1.739 sum 3.250 -16.610 1.636 17.004 Atomic orbital electron populations 1.70003 1.07267 1.27969 1.32304 1.25765 0.94654 1.00671 0.92442 0.86340 0.79847 0.80447 0.79654 1.19056 1.20357 1.19090 1.20017 0.94298 0.90068 1.53099 0.91257 1.17044 0.87602 0.82098 0.77952 1.90655 1.13574 1.86052 1.54852 1.44126 1.09394 1.04361 1.76793 1.17918 0.94273 0.86750 0.94446 1.21219 0.95233 0.97104 0.97623 1.20294 1.01444 0.90281 1.02546 1.18813 0.92966 0.85464 0.99674 1.85972 1.51129 1.16440 1.69846 1.22432 0.96928 0.85035 0.96546 1.21375 1.00523 0.91548 1.02484 1.21976 0.93077 0.85965 0.98727 1.86466 1.54051 1.20755 1.76614 1.20798 0.97077 0.98637 1.03948 1.20660 1.01887 0.92570 1.01427 0.91590 0.77640 0.83693 0.85810 0.92267 0.92237 0.90092 0.90140 0.93293 0.93254 0.77147 0.86409 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.57 11.73 55.56 0.65 -20.92 16 2 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 3 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.54 -14.65 9.31 -37.52 -0.35 -15.00 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 15.10 7.30 -14.91 -0.11 14.99 16 10 O -0.57 -17.74 12.56 5.12 0.06 -17.68 16 11 N -0.70 -15.91 5.31 -12.40 -0.07 -15.97 16 12 C 0.16 3.50 6.28 -83.72 -0.53 2.98 16 13 C -0.09 -1.98 8.65 -39.36 -0.34 -2.32 16 14 C -0.13 -2.40 9.98 -39.45 -0.39 -2.80 16 15 C 0.08 1.31 6.69 -39.12 -0.26 1.05 16 16 O -0.32 -4.94 10.13 -19.43 -0.20 -5.13 16 17 C 0.07 0.74 4.74 37.16 0.18 0.92 16 18 C -0.12 -1.21 5.95 -26.73 -0.16 -1.37 16 19 C 0.08 0.61 7.05 37.16 0.26 0.87 16 20 O -0.57 -4.80 13.66 -35.23 -0.48 -5.28 16 21 C -0.19 -2.97 9.03 -39.45 -0.36 -3.33 16 22 C -0.14 -2.53 9.96 -39.36 -0.39 -2.92 16 23 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 24 H 0.39 7.53 8.77 -40.82 -0.36 7.17 16 25 H 0.15 3.56 6.41 -52.49 -0.34 3.22 16 26 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.06 0.61 7.64 -51.93 -0.40 0.22 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.38 1.31 9.12 45.56 0.42 1.72 16 34 H 0.12 1.50 6.29 -52.48 -0.33 1.17 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -34.32 305.45 -6.48 -40.80 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.49 Total: 9.99 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.54 Total: -4.68 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.59 Total: -36.90 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.61 Total: -28.09 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.32 -6.48 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286632256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.220 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds