Wall clock time and date at job start Mon Mar 30 2020 00:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00349 * 2 1 4 4 N 1.46899 * 109.47074 * 124.99994 * 3 2 1 5 5 C 1.46895 * 111.00144 * 288.98721 * 4 3 2 6 6 C 1.50704 * 109.47101 * 160.71456 * 5 4 3 7 7 H 1.08001 * 119.99907 * 1.51000 * 6 5 4 8 8 C 1.37873 * 120.00080 * 181.51356 * 6 5 4 9 9 N 1.31519 * 120.00019 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00224 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46940 * 90.00073 * 10 8 6 12 12 H 1.48499 * 109.47379 * 210.00234 * 10 8 6 13 13 H 1.48501 * 109.46812 * 330.00365 * 10 8 6 14 14 C 1.46904 * 110.99830 * 165.03572 * 4 3 2 15 15 C 1.50702 * 109.46724 * 293.95276 * 14 4 3 16 16 C 1.34850 * 119.48196 * 89.73093 * 15 14 4 17 17 C 1.41727 * 119.01866 * 179.80313 * 16 15 14 18 18 O 1.22161 * 120.92653 * 180.22460 * 17 16 15 19 19 C 1.42230 * 118.14810 * 0.45758 * 17 16 15 20 20 O 1.36087 * 120.55960 * 179.74251 * 19 17 16 21 21 C 1.35109 * 118.88205 * 359.76163 * 19 17 16 22 22 O 1.33776 * 119.48612 * 269.99908 * 15 14 4 23 23 H 1.07998 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00122 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99770 * 180.02562 * 2 1 3 26 26 H 1.09006 * 109.46759 * 5.00621 * 3 2 1 27 27 H 1.08996 * 109.47546 * 245.00755 * 3 2 1 28 28 H 1.09000 * 109.47567 * 280.71221 * 5 4 3 29 29 H 1.08997 * 109.47112 * 40.71677 * 5 4 3 30 30 H 0.96994 * 120.00243 * 179.97438 * 9 8 6 31 31 H 1.08991 * 109.47086 * 53.95471 * 14 4 3 32 32 H 1.08996 * 109.47263 * 173.95996 * 14 4 3 33 33 H 1.07997 * 120.48988 * 0.02562 * 16 15 14 34 34 H 0.96703 * 113.99473 * 270.02204 * 20 19 17 35 35 H 1.08009 * 119.56959 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3318 1.1345 5 6 2.2743 1.4656 2.4067 6 6 3.1652 1.0235 3.5389 7 1 4.1758 0.7007 3.3364 8 6 2.6902 1.0309 4.8332 9 7 3.4676 0.6445 5.8212 10 14 0.9425 1.5897 5.1836 11 1 0.0270 0.4222 5.1179 12 1 0.8782 2.1936 6.5387 13 1 0.5330 2.5973 4.1725 14 6 3.9872 2.4048 0.9762 15 6 4.8702 2.1025 -0.2070 16 6 4.5154 2.5453 -1.4303 17 6 5.3552 2.2589 -2.5355 18 8 5.0695 2.6465 -3.6582 19 6 6.5374 1.5034 -2.3018 20 8 7.3762 1.1959 -3.3283 21 6 6.8133 1.0957 -1.0436 22 8 5.9911 1.3944 -0.0282 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0897 27 1 2.6213 1.4026 -0.9314 28 1 1.9887 2.5071 2.5547 29 1 1.3798 0.8433 2.3840 30 1 3.1335 0.6500 6.7318 31 1 3.4737 3.3524 0.8136 32 1 4.5972 2.4720 1.8769 33 1 3.6066 3.1128 -1.5653 34 1 7.1692 0.3601 -3.7684 35 1 7.7083 0.5217 -0.8535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292239279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:46 Heat of formation + Delta-G solvation = -61.560963 kcal Electronic energy + Delta-G solvation = -19891.189239 eV Core-core repulsion = 16663.294460 eV Total energy + Delta-G solvation = -3227.894779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12796 -40.00399 -39.10329 -38.12947 -34.92729 -34.73487 -33.46142 -32.28512 -29.86874 -28.23816 -25.72772 -25.42940 -23.77543 -22.17883 -20.70154 -20.08895 -19.60364 -18.92903 -18.07907 -17.75597 -17.00122 -16.73085 -16.22876 -15.96073 -15.80303 -15.37935 -15.25078 -15.11896 -14.77609 -14.44528 -14.11060 -14.03574 -13.53529 -13.19473 -12.87498 -12.50884 -12.38100 -12.19839 -11.93661 -11.85345 -11.48332 -10.81392 -10.70770 -10.60700 -10.21107 -9.71516 -9.19147 -8.23477 -6.26153 -0.22622 -0.07879 1.22459 1.38978 1.40059 1.41310 1.49238 2.21785 2.37743 2.81458 3.07869 3.15479 3.39609 3.51188 3.84413 4.00975 4.09192 4.22665 4.34439 4.44039 4.54365 4.58132 4.69915 4.76719 4.90503 4.95784 4.99779 5.10584 5.56300 5.72796 5.77230 6.00938 6.03354 6.19951 6.43830 6.57679 6.77752 6.81377 7.37192 8.92645 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.005332 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.480991 B = 5250.530762 C = 5988.524686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.064 3.936 4 N -0.532 5.532 5 C 0.175 3.825 6 C -0.511 4.511 7 H 0.045 0.955 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.937 3.063 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.247 1.247 14 C 0.098 3.902 15 C 0.177 3.823 16 C -0.312 4.312 17 C 0.375 3.625 18 O -0.541 6.541 19 C -0.105 4.105 20 O -0.476 6.476 21 C 0.113 3.887 22 O -0.195 6.195 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.001 0.999 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.405 0.595 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 0.493 -12.623 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.170 4.170 3 C -0.063 4.063 4 N -0.257 5.257 5 C 0.049 3.951 6 C -0.550 4.550 7 H 0.063 0.937 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.761 3.239 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.170 1.170 14 C -0.029 4.029 15 C 0.127 3.873 16 C -0.333 4.333 17 C 0.269 3.731 18 O -0.432 6.432 19 C -0.152 4.152 20 O -0.287 6.287 21 C 0.047 3.953 22 O -0.094 6.094 23 H 0.120 0.880 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.182 0.818 34 H 0.262 0.738 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.487 0.668 -12.581 12.687 hybrid contribution -1.121 0.316 0.218 1.185 sum 0.366 0.984 -12.363 12.408 Atomic orbital electron populations 1.23989 0.95493 1.02708 1.00634 1.22851 0.96087 0.98288 0.99730 1.21549 0.94637 0.95575 0.94533 1.61750 1.16183 1.44960 1.02758 1.19971 0.93840 0.95132 0.86180 1.21236 1.00066 1.42936 0.90712 0.93696 1.25722 1.01535 0.95189 0.96016 1.70034 1.38544 1.49782 1.00332 0.85873 0.80418 0.79611 0.78015 1.19502 1.21242 1.17036 1.21156 0.92892 0.94252 0.94615 1.22605 0.83072 0.85461 0.96123 1.22782 1.06348 1.12354 0.91789 1.18376 0.85843 0.79691 0.89240 1.90763 1.74987 1.51057 1.26371 1.20019 0.96490 1.08810 0.89886 1.84905 1.51465 1.46271 1.46106 1.25131 0.93175 0.92694 0.84311 1.83106 1.29488 1.58562 1.38263 0.88017 0.87110 0.87641 0.93564 0.89154 0.98160 0.94723 0.92581 0.88884 0.88291 0.81759 0.73769 0.73546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.80 14.32 67.77 0.97 -3.83 16 2 C -0.15 -4.38 8.70 25.64 0.22 -4.15 16 3 C 0.06 1.87 5.23 85.56 0.45 2.31 16 4 N -0.53 -18.81 4.37 -909.96 -3.98 -22.78 16 5 C 0.17 7.40 3.66 85.56 0.31 7.72 16 6 C -0.51 -26.93 9.12 25.60 0.23 -26.70 16 7 H 0.04 2.65 7.97 -2.91 -0.02 2.62 16 8 C 0.01 0.71 5.47 84.65 0.46 1.17 16 9 N -0.95 -56.20 13.96 21.45 0.30 -55.90 16 10 Si 0.94 41.21 27.44 68.60 1.88 43.09 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.25 -9.92 6.59 99.48 0.66 -9.26 16 14 C 0.10 2.98 5.13 85.56 0.44 3.42 16 15 C 0.18 4.79 6.04 24.91 0.15 4.94 16 16 C -0.31 -8.42 7.73 22.35 0.17 -8.25 16 17 C 0.37 11.48 6.81 24.12 0.16 11.65 16 18 O -0.54 -20.61 17.74 8.52 0.15 -20.46 16 19 C -0.10 -2.54 6.73 22.54 0.15 -2.39 16 20 O -0.48 -10.46 13.37 -80.18 -1.07 -11.54 16 21 C 0.11 2.17 11.30 67.10 0.76 2.92 16 22 O -0.19 -4.92 9.74 5.17 0.05 -4.87 16 23 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 24 H 0.11 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.11 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.05 1.26 7.72 -2.38 -0.02 1.24 16 27 H 0.09 2.43 5.14 -2.39 -0.01 2.42 16 28 H 0.00 0.03 7.17 -2.39 -0.02 0.01 16 29 H 0.03 1.48 6.43 -2.39 -0.02 1.47 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.09 2.40 8.04 -2.39 -0.02 2.38 16 32 H 0.10 3.43 7.35 -2.39 -0.02 3.41 16 33 H 0.16 4.09 7.70 -2.91 -0.02 4.07 16 34 H 0.40 5.06 9.07 -74.06 -0.67 4.39 16 35 H 0.25 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.63 304.57 2.21 -69.42 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.39 Total: 14.23 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.49 Total: -11.19 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -3.68 Total: -78.69 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.87 Total: -36.87 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.09 kcal Total: -71.63 2.21 -69.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292239279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.864 kcal (2) G-P(sol) polarization free energy of solvation -71.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds