Wall clock time and date at job start Mon Mar 30 2020 00:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35910 * 116.99439 * 2 1 4 4 C 1.38489 * 119.95432 * 0.02562 * 3 2 1 5 5 C 1.39580 * 119.90248 * 179.97438 * 4 3 2 6 6 C 1.47746 * 120.09891 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00082 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.36875 * 120.00031 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99842 * 359.97438 * 9 8 6 11 11 C 1.39048 * 120.00134 * 179.73040 * 9 8 6 12 12 N 1.31362 * 120.00004 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99876 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47184 * 60.00010 * 13 11 9 15 15 H 1.48505 * 109.46859 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47384 * 299.99811 * 13 11 9 17 17 C 1.39584 * 119.80032 * 0.27572 * 5 4 3 18 18 C 1.38496 * 119.90011 * 359.46723 * 17 5 4 19 19 O 1.35907 * 119.95013 * 180.23005 * 18 17 5 20 20 C 1.42895 * 117.00198 * 0.30789 * 19 18 17 21 21 C 1.38747 * 120.09766 * 0.53481 * 18 17 5 22 22 C 1.50696 * 119.90260 * 179.69660 * 21 18 17 23 23 H 1.08997 * 109.46972 * 299.99446 * 1 2 3 24 24 H 1.08993 * 109.47697 * 59.99985 * 1 2 3 25 25 H 1.09004 * 109.46491 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.04566 * 0.02562 * 4 3 2 27 27 H 0.97005 * 120.00189 * 0.02562 * 8 6 5 28 28 H 0.96995 * 120.00055 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.05134 * 179.70336 * 17 5 4 30 30 H 1.09003 * 109.46624 * 299.99342 * 20 19 18 31 31 H 1.09003 * 109.47764 * 59.99349 * 20 19 18 32 32 H 1.08997 * 109.47141 * 179.97438 * 20 19 18 33 33 H 1.08998 * 109.47491 * 270.02421 * 22 21 18 34 34 H 1.09001 * 109.46991 * 30.02552 * 22 21 18 35 35 H 1.09003 * 109.47487 * 150.02134 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2906 2.3718 0.0005 5 6 1.9253 3.6150 0.0011 6 6 1.1238 4.8561 0.0011 7 8 -0.0906 4.7956 0.0011 8 7 1.7387 6.0554 0.0021 9 6 0.9962 7.2052 0.0027 10 1 -0.0825 7.1515 0.0018 11 6 1.6307 8.4425 0.0094 12 7 2.9426 8.5079 0.0158 13 14 0.6173 10.0118 0.0094 14 1 -0.2451 10.0442 1.2180 15 1 1.5249 11.1871 0.0179 16 1 -0.2336 10.0516 -1.2070 17 6 3.3195 3.6820 -0.0048 18 6 4.0668 2.5160 0.0001 19 8 5.4244 2.5802 -0.0008 20 6 6.0123 3.8826 -0.0001 21 6 3.4316 1.2825 -0.0004 22 6 4.2491 0.0165 -0.0020 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.2121 2.3152 0.0014 27 1 2.7076 6.1037 0.0025 28 1 3.3852 9.3710 0.0208 29 1 3.8148 4.6418 -0.0092 30 1 5.6929 4.4258 -0.8895 31 1 5.6941 4.4245 0.8905 32 1 7.0985 3.7909 -0.0005 33 1 4.4459 -0.2877 -1.0300 34 1 5.1940 0.1936 0.5117 35 1 3.6988 -0.7721 0.5112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299627067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:24 Heat of formation + Delta-G solvation = -91.223533 kcal Electronic energy + Delta-G solvation = -19927.430174 eV Core-core repulsion = 16698.249130 eV Total energy + Delta-G solvation = -3229.181045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38342 -38.78670 -38.22467 -35.80648 -34.14391 -32.55609 -31.36005 -29.22894 -27.61471 -27.39518 -26.64674 -24.76755 -22.01338 -21.45938 -19.88864 -18.43215 -17.60721 -16.64692 -16.09818 -15.81855 -15.64856 -15.31987 -15.14660 -14.62363 -14.23432 -13.97689 -13.58403 -13.13182 -13.12666 -12.74395 -12.28598 -12.04694 -11.79643 -11.70550 -11.54259 -11.32841 -11.19393 -11.14435 -10.72592 -10.53453 -10.34879 -10.31306 -9.65475 -8.57409 -8.17102 -7.95370 -7.84480 -6.63705 -3.95950 1.33323 1.74324 3.08153 3.11916 3.16615 3.20997 3.61716 3.83844 4.02947 4.43076 4.73291 5.13026 5.18764 5.22399 5.23065 5.24987 5.31622 5.38896 5.48735 5.54214 5.64597 5.74894 5.88968 5.91070 5.91844 5.95669 6.43074 6.46653 6.63729 6.74733 6.84123 7.35803 7.47681 7.62754 7.88822 8.43053 8.98595 9.34072 9.90330 10.53115 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.005611 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.786341 B = 4988.724317 C = 6236.753973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.152 3.848 4 C -0.196 4.196 5 C -0.022 4.022 6 C 0.462 3.538 7 O -0.596 6.596 8 N -0.538 5.538 9 C -0.295 4.295 10 H 0.109 0.891 11 C 0.025 3.975 12 N -0.889 5.889 13 Si 0.937 3.063 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.223 4.223 18 C 0.157 3.843 19 O -0.314 6.314 20 C 0.025 3.975 21 C -0.154 4.154 22 C -0.089 4.089 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.139 0.861 27 H 0.393 0.607 28 H 0.277 0.723 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 -11.675 -0.010 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.106 3.894 4 C -0.217 4.217 5 C -0.026 4.026 6 C 0.250 3.750 7 O -0.483 6.483 8 N -0.172 5.172 9 C -0.425 4.425 10 H 0.126 0.874 11 C -0.179 4.179 12 N -0.528 5.528 13 Si 0.763 3.237 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.196 1.196 17 C -0.243 4.243 18 C 0.111 3.889 19 O -0.228 6.228 20 C -0.070 4.070 21 C -0.156 4.156 22 C -0.145 4.145 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.157 0.843 27 H 0.228 0.772 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.167 -11.826 -0.008 12.539 hybrid contribution -0.111 1.440 -0.002 1.445 sum 4.056 -10.386 -0.010 11.150 Atomic orbital electron populations 1.23065 0.78284 1.03417 1.02083 1.85987 1.21357 1.26583 1.88843 1.18235 0.90731 0.84072 0.96315 1.21144 1.00761 0.90532 1.09239 1.19844 0.92355 0.94400 0.96012 1.17674 0.87618 0.83022 0.86670 1.90587 1.13406 1.86693 1.57593 1.41898 1.09633 1.04597 1.61055 1.19827 0.93314 0.82577 1.46756 0.87368 1.25402 0.95996 0.99886 0.96616 1.69571 1.07857 1.27302 1.48089 0.85812 0.79025 0.79493 0.79371 1.19586 1.20712 1.19577 1.21374 0.94108 0.97685 1.11136 1.18216 0.82242 0.92546 0.95872 1.85983 1.17031 1.31044 1.88727 1.23105 0.98516 0.83147 1.02268 1.18245 0.90461 0.93933 1.12982 1.20343 0.98706 0.93721 1.01752 0.92381 0.92359 0.88494 0.84306 0.77175 0.91294 0.84826 0.92199 0.92212 0.88376 0.92067 0.91641 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.65 9.52 -19.46 -0.19 -4.83 16 3 C 0.15 2.59 6.65 -39.30 -0.26 2.32 16 4 C -0.20 -3.76 8.58 -38.99 -0.33 -4.09 16 5 C -0.02 -0.47 5.87 -105.01 -0.62 -1.08 16 6 C 0.46 11.69 7.72 -12.37 -0.10 11.60 16 7 O -0.60 -16.79 15.91 5.29 0.08 -16.71 16 8 N -0.54 -13.91 5.23 -11.86 -0.06 -13.97 16 9 C -0.30 -8.12 9.68 -15.00 -0.15 -8.26 16 10 H 0.11 3.09 7.15 -52.48 -0.38 2.72 16 11 C 0.02 0.64 5.50 -17.45 -0.10 0.54 16 12 N -0.89 -23.16 13.05 55.50 0.72 -22.43 16 13 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 C -0.22 -4.18 8.53 -38.98 -0.33 -4.51 16 18 C 0.16 2.67 6.65 -39.30 -0.26 2.41 16 19 O -0.31 -4.74 9.52 -19.45 -0.19 -4.93 16 20 C 0.02 0.30 9.81 101.05 0.99 1.29 16 21 C -0.15 -2.55 5.91 -104.24 -0.62 -3.17 16 22 C -0.09 -1.20 9.56 36.00 0.34 -0.85 16 23 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 24 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.14 2.63 5.87 -52.49 -0.31 2.32 16 27 H 0.39 9.60 5.92 -40.82 -0.24 9.36 16 28 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.13 2.42 4.62 -52.49 -0.24 2.18 16 30 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 31 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16 35 H 0.06 0.83 7.52 -51.93 -0.39 0.44 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -31.13 300.32 -4.50 -35.62 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.94 Total: 9.99 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.43 Total: -2.50 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.66 Total: -36.41 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.29 Total: -26.47 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.13 -4.50 -35.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299627067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.601 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds