Wall clock time and date at job start Mon Mar 30 2020 00:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35910 * 116.99439 * 2 1 4 4 C 1.38489 * 119.95432 * 0.02562 * 3 2 1 5 5 C 1.39580 * 119.90248 * 179.97438 * 4 3 2 6 6 C 1.47746 * 120.09891 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00082 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.36875 * 120.00031 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99842 * 359.97438 * 9 8 6 11 11 C 1.39048 * 120.00134 * 179.73040 * 9 8 6 12 12 N 1.31362 * 120.00004 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99876 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47184 * 60.00010 * 13 11 9 15 15 H 1.48505 * 109.46859 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47384 * 299.99811 * 13 11 9 17 17 C 1.39584 * 119.80032 * 0.27572 * 5 4 3 18 18 C 1.38496 * 119.90011 * 359.46723 * 17 5 4 19 19 O 1.35907 * 119.95013 * 180.23005 * 18 17 5 20 20 C 1.42895 * 117.00198 * 0.30789 * 19 18 17 21 21 C 1.38747 * 120.09766 * 0.53481 * 18 17 5 22 22 C 1.50696 * 119.90260 * 179.69660 * 21 18 17 23 23 H 1.08997 * 109.46972 * 299.99446 * 1 2 3 24 24 H 1.08993 * 109.47697 * 59.99985 * 1 2 3 25 25 H 1.09004 * 109.46491 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.04566 * 0.02562 * 4 3 2 27 27 H 0.97005 * 120.00189 * 0.02562 * 8 6 5 28 28 H 0.96995 * 120.00055 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.05134 * 179.70336 * 17 5 4 30 30 H 1.09003 * 109.46624 * 299.99342 * 20 19 18 31 31 H 1.09003 * 109.47764 * 59.99349 * 20 19 18 32 32 H 1.08997 * 109.47141 * 179.97438 * 20 19 18 33 33 H 1.08998 * 109.47491 * 270.02421 * 22 21 18 34 34 H 1.09001 * 109.46991 * 30.02552 * 22 21 18 35 35 H 1.09003 * 109.47487 * 150.02134 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2906 2.3718 0.0005 5 6 1.9253 3.6150 0.0011 6 6 1.1238 4.8561 0.0011 7 8 -0.0906 4.7956 0.0011 8 7 1.7387 6.0554 0.0021 9 6 0.9962 7.2052 0.0027 10 1 -0.0825 7.1515 0.0018 11 6 1.6307 8.4425 0.0094 12 7 2.9426 8.5079 0.0158 13 14 0.6173 10.0118 0.0094 14 1 -0.2451 10.0442 1.2180 15 1 1.5249 11.1871 0.0179 16 1 -0.2336 10.0516 -1.2070 17 6 3.3195 3.6820 -0.0048 18 6 4.0668 2.5160 0.0001 19 8 5.4244 2.5802 -0.0008 20 6 6.0123 3.8826 -0.0001 21 6 3.4316 1.2825 -0.0004 22 6 4.2491 0.0165 -0.0020 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.2121 2.3152 0.0014 27 1 2.7076 6.1037 0.0025 28 1 3.3852 9.3710 0.0208 29 1 3.8148 4.6418 -0.0092 30 1 5.6929 4.4258 -0.8895 31 1 5.6941 4.4245 0.8905 32 1 7.0985 3.7909 -0.0005 33 1 4.4459 -0.2877 -1.0300 34 1 5.1940 0.1936 0.5117 35 1 3.6988 -0.7721 0.5112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299627067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:24 Heat of formation + Delta-G solvation = -112.395405 kcal Electronic energy + Delta-G solvation = -19928.348256 eV Core-core repulsion = 16698.249130 eV Total energy + Delta-G solvation = -3230.099126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76456 -40.09116 -39.98357 -37.17887 -36.16908 -34.02981 -33.26111 -30.60058 -28.78520 -28.63505 -27.93627 -26.53937 -23.52584 -22.77725 -21.51045 -20.36860 -19.22525 -18.03228 -17.39619 -17.17765 -17.00930 -16.84928 -16.43455 -16.26105 -15.83896 -15.52311 -15.50102 -14.55524 -14.26937 -14.25059 -13.60831 -13.40035 -13.30943 -13.07883 -12.89706 -12.61991 -12.55495 -12.41833 -12.32952 -12.14229 -12.01565 -11.73390 -11.54960 -10.60048 -10.18693 -9.32403 -9.22994 -8.61263 -6.05864 -0.18739 0.33320 1.39735 1.39964 1.51380 1.90315 1.95949 2.23104 2.68257 2.71060 2.96191 3.22313 3.71039 3.85638 3.94729 4.14740 4.24074 4.38160 4.39617 4.39724 4.43677 4.59284 4.73915 4.75543 4.78067 4.90198 4.93700 5.20140 5.28254 5.31153 5.34762 5.47844 5.86126 6.22821 6.33306 6.43138 6.95546 7.34251 7.91194 8.55657 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.005611 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.786341 B = 4988.724317 C = 6236.753973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.311 6.311 3 C 0.157 3.843 4 C -0.202 4.202 5 C -0.050 4.050 6 C 0.459 3.541 7 O -0.634 6.634 8 N -0.544 5.544 9 C -0.340 4.340 10 H 0.086 0.914 11 C -0.006 4.006 12 N -0.906 5.906 13 Si 1.001 2.999 14 H -0.269 1.269 15 H -0.265 1.265 16 H -0.269 1.269 17 C -0.222 4.222 18 C 0.159 3.841 19 O -0.310 6.310 20 C 0.017 3.983 21 C -0.149 4.149 22 C -0.086 4.086 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.398 0.602 28 H 0.285 0.715 29 H 0.134 0.866 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -12.807 -0.029 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.224 6.224 3 C 0.111 3.889 4 C -0.223 4.223 5 C -0.054 4.054 6 C 0.248 3.752 7 O -0.524 6.524 8 N -0.178 5.178 9 C -0.469 4.469 10 H 0.104 0.896 11 C -0.208 4.208 12 N -0.545 5.545 13 Si 0.823 3.177 14 H -0.194 1.194 15 H -0.189 1.189 16 H -0.194 1.194 17 C -0.242 4.242 18 C 0.113 3.887 19 O -0.223 6.223 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.233 0.767 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.566 -12.975 -0.027 14.119 hybrid contribution -0.463 1.611 0.003 1.676 sum 5.103 -11.364 -0.024 12.457 Atomic orbital electron populations 1.23371 0.76494 1.05886 1.01853 1.86006 1.23087 1.25000 1.88307 1.18246 0.91051 0.84141 0.95431 1.21162 1.00810 0.90756 1.09558 1.19554 0.93116 0.93111 0.99583 1.18350 0.87580 0.84140 0.85125 1.90530 1.15254 1.87546 1.59028 1.41883 1.09706 1.04591 1.61609 1.19812 0.92742 0.84094 1.50296 0.89614 1.26217 0.97190 1.02187 0.95181 1.69620 1.08777 1.28504 1.47576 0.84875 0.77746 0.75841 0.79217 1.19440 1.18902 1.19411 1.21344 0.93174 0.98667 1.11040 1.18256 0.83199 0.92063 0.95167 1.86005 1.15529 1.32574 1.88241 1.23387 1.00425 0.82011 1.01951 1.18713 0.90640 0.95124 1.10621 1.20424 0.98659 0.92189 1.02931 0.92651 0.92633 0.84662 0.84836 0.76687 0.90528 0.84826 0.92538 0.92553 0.84753 0.90653 0.90640 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.31 -8.52 9.52 -92.53 -0.88 -9.40 16 3 C 0.16 5.16 6.65 22.45 0.15 5.31 16 4 C -0.20 -7.84 8.58 22.65 0.19 -7.65 16 5 C -0.05 -2.18 5.87 -20.12 -0.12 -2.30 16 6 C 0.46 24.34 7.72 86.76 0.67 25.01 16 7 O -0.63 -37.62 15.91 -3.99 -0.06 -37.69 16 8 N -0.54 -29.38 5.23 -309.71 -1.62 -31.00 16 9 C -0.34 -19.48 9.68 84.10 0.81 -18.67 16 10 H 0.09 5.18 7.15 -2.91 -0.02 5.16 16 11 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 12 N -0.91 -47.36 13.05 21.68 0.28 -47.08 16 13 Si 1.00 41.63 29.55 68.60 2.03 43.65 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 C -0.22 -8.37 8.53 22.66 0.19 -8.18 16 18 C 0.16 5.21 6.65 22.45 0.15 5.36 16 19 O -0.31 -8.64 9.52 -92.50 -0.88 -9.52 16 20 C 0.02 0.37 9.81 113.37 1.11 1.49 16 21 C -0.15 -4.62 5.91 -19.62 -0.12 -4.74 16 22 C -0.09 -2.02 9.56 71.23 0.68 -1.34 16 23 H 0.05 1.22 7.65 -2.39 -0.02 1.21 16 24 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 25 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.13 5.21 5.87 -2.91 -0.02 5.20 16 27 H 0.40 20.19 5.92 -92.70 -0.55 19.64 16 28 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.13 4.94 4.62 -2.91 -0.01 4.92 16 30 H 0.06 1.33 7.64 -2.39 -0.02 1.31 16 31 H 0.06 1.32 7.67 -2.39 -0.02 1.31 16 32 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.66 7.52 -2.39 -0.02 1.64 16 35 H 0.08 1.65 7.52 -2.39 -0.02 1.64 16 Total: -1.00 -68.41 300.32 4.76 -63.65 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.58 Total: 31.42 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.31 Total: -4.04 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.34 Total: -78.08 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -1.83 Total: -56.61 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -68.41 4.76 -63.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299627067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.744 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds