Wall clock time and date at job start Mon Mar 30 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.00225 * 2 1 4 4 C 1.54337 * 109.98911 * 238.95704 * 2 1 3 5 5 H 1.09001 * 110.66744 * 337.05739 * 4 2 1 6 6 C 1.53003 * 110.84750 * 100.20067 * 4 2 1 7 7 F 1.39896 * 109.47281 * 175.14952 * 6 4 2 8 8 F 1.39901 * 109.46940 * 295.14980 * 6 4 2 9 9 F 1.39895 * 109.47041 * 55.14635 * 6 4 2 10 10 C 1.55151 * 103.02393 * 218.66725 * 4 2 1 11 11 C 1.54914 * 101.57967 * 35.31019 * 10 4 2 12 12 N 1.47024 * 109.88033 * 121.10036 * 2 1 3 13 13 C 1.34777 * 125.64362 * 298.38309 * 12 2 1 14 14 O 1.21691 * 120.00328 * 359.72793 * 13 12 2 15 15 C 1.46376 * 120.00069 * 179.71920 * 13 12 2 16 16 H 1.08005 * 119.99800 * 0.02562 * 15 13 12 17 17 C 1.40047 * 120.00289 * 179.72718 * 15 13 12 18 18 N 1.30676 * 119.99832 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99995 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46822 * 60.00336 * 19 17 15 21 21 H 1.48505 * 109.46859 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47384 * 300.00133 * 19 17 15 23 23 H 1.09001 * 109.46813 * 300.36073 * 1 2 3 24 24 H 1.08995 * 109.47263 * 60.35455 * 1 2 3 25 25 H 1.09001 * 109.47458 * 180.36450 * 1 2 3 26 26 H 1.09002 * 109.47376 * 179.64751 * 3 2 1 27 27 H 1.09005 * 109.47112 * 299.64314 * 3 2 1 28 28 H 1.08993 * 109.47150 * 59.64233 * 3 2 1 29 29 H 1.09000 * 111.00715 * 277.23701 * 10 4 2 30 30 H 1.08997 * 111.03423 * 153.39301 * 10 4 2 31 31 H 1.08999 * 110.36571 * 204.14905 * 11 10 4 32 32 H 1.09000 * 110.36922 * 81.82672 * 11 10 4 33 33 H 0.96995 * 120.00002 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4376 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 1.3065 -1.4406 -1.6225 6 6 2.4817 0.2385 -2.3326 7 9 3.0561 -0.4625 -3.3983 8 9 1.3608 0.9415 -2.7871 9 9 3.4159 1.1387 -1.8090 10 6 3.2863 -1.5185 -0.6915 11 6 2.8098 -1.8826 0.7369 12 7 2.0300 -0.7142 1.1839 13 6 1.8075 -0.3620 2.4657 14 8 1.1454 0.6271 2.7188 15 6 2.3620 -1.1695 3.5534 16 1 2.9499 -2.0473 3.3287 17 6 2.1356 -0.8004 4.8852 18 7 1.4288 0.2646 5.1569 19 14 2.8439 -1.8306 6.2732 20 1 4.3240 -1.8662 6.1575 21 1 2.4642 -1.2313 7.5778 22 1 2.3072 -3.2125 6.1877 23 1 -0.3633 0.5194 0.8868 24 1 -0.3633 0.5083 -0.8931 25 1 -0.3634 -1.0276 0.0065 26 1 3.1433 1.4276 0.0063 27 1 1.7000 1.9529 -0.8932 28 1 1.6896 1.9567 0.8867 29 1 4.1669 -0.8771 -0.6579 30 1 3.4811 -2.4158 -1.2789 31 1 3.6654 -2.0414 1.3932 32 1 2.1799 -2.7719 0.7116 33 1 1.2716 0.5200 6.0794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303826208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:56 Heat of formation + Delta-G solvation = -179.594045 kcal Electronic energy + Delta-G solvation = -21833.453664 eV Core-core repulsion = 18058.583846 eV Total energy + Delta-G solvation = -3774.869818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.09369 -47.55568 -47.44815 -39.27964 -35.92409 -32.64069 -32.09387 -31.12357 -27.15167 -26.78421 -25.96884 -23.44826 -22.02161 -20.81223 -18.67468 -18.27963 -18.04971 -16.75962 -16.49209 -15.54294 -15.09165 -14.67107 -14.31221 -14.15213 -14.02343 -13.88102 -13.66965 -13.61148 -13.06677 -12.83579 -12.67476 -12.39204 -12.05139 -11.62872 -11.48588 -11.31714 -11.08359 -11.00900 -10.88480 -10.66887 -10.48609 -10.33002 -10.20136 -10.07309 -8.88547 -7.61912 -7.30404 -6.23824 -4.69487 2.88935 3.12473 3.17860 3.19236 3.86229 4.02165 4.07993 4.19487 4.45674 4.52403 4.82627 4.92293 5.15728 5.46750 5.59072 5.66427 5.67783 5.80743 6.01537 6.15103 6.21382 6.33091 6.39716 6.44602 6.53858 6.88884 7.02188 7.32723 7.39073 8.05301 8.34384 8.97298 9.42845 10.52943 10.71683 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.037562 B = 0.006110 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.249567 B = 4581.859909 C = 4905.536649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.182 3.818 3 C -0.175 4.175 4 C -0.147 4.147 5 H 0.120 0.880 6 C 0.463 3.537 7 F -0.189 7.189 8 F -0.183 7.183 9 F -0.174 7.174 10 C -0.128 4.128 11 C 0.120 3.880 12 N -0.634 5.634 13 C 0.576 3.424 14 O -0.567 6.567 15 C -0.540 4.540 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -3.705 -12.346 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.095 3.905 3 C -0.233 4.233 4 C -0.167 4.167 5 H 0.138 0.862 6 C 0.409 3.591 7 F -0.170 7.170 8 F -0.164 7.164 9 F -0.155 7.155 10 C -0.166 4.166 11 C -0.004 4.004 12 N -0.374 5.374 13 C 0.383 3.617 14 O -0.449 6.449 15 C -0.577 4.577 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.324 -2.963 -11.963 12.542 hybrid contribution 0.435 -0.457 0.354 0.723 sum 2.758 -3.421 -11.609 12.413 Atomic orbital electron populations 1.22165 0.94512 1.01699 1.02765 1.20402 0.93996 0.92103 0.83964 1.22813 1.02015 0.95707 1.02790 1.23681 1.01869 0.96944 0.94240 0.86241 1.20386 0.74965 0.81356 0.82376 1.93152 1.85411 1.78848 1.59601 1.93150 1.52443 1.80620 1.90223 1.93174 1.67128 1.69658 1.85533 1.22912 0.95842 1.00162 0.97663 1.21882 0.95982 0.90208 0.92343 1.48858 1.56500 1.27609 1.04439 1.17974 0.80276 0.85014 0.78460 1.90590 1.43639 1.29222 1.81415 1.20850 1.35213 1.12065 0.89535 0.91313 1.25704 0.93507 0.94461 0.99530 1.69998 1.28958 1.20622 1.19927 0.86435 0.79966 0.80479 0.79908 1.19271 1.20531 1.19263 0.90045 0.93013 0.93043 0.91185 0.93134 0.90261 0.89930 0.89651 0.90366 0.92939 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.42 37.16 0.31 -2.51 16 2 C 0.18 3.39 0.68 -130.84 -0.09 3.30 16 3 C -0.18 -3.40 6.88 37.15 0.26 -3.15 16 4 C -0.15 -2.13 2.46 -88.78 -0.22 -2.35 16 5 H 0.12 1.50 7.85 -51.93 -0.41 1.09 16 6 C 0.46 6.55 2.38 37.16 0.09 6.64 16 7 F -0.19 -2.48 17.12 2.25 0.04 -2.44 16 8 F -0.18 -2.65 15.59 2.25 0.04 -2.62 16 9 F -0.17 -2.66 12.36 2.25 0.03 -2.64 16 10 C -0.13 -1.73 6.31 -24.58 -0.16 -1.89 16 11 C 0.12 2.06 6.52 -2.53 -0.02 2.04 16 12 N -0.63 -13.77 2.82 -157.44 -0.44 -14.21 16 13 C 0.58 15.73 7.35 -12.99 -0.10 15.64 16 14 O -0.57 -17.41 12.62 5.20 0.07 -17.34 16 15 C -0.54 -14.73 8.98 -35.63 -0.32 -15.05 16 16 H 0.07 1.71 6.64 -52.48 -0.35 1.37 16 17 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 18 N -0.77 -22.39 11.83 55.55 0.66 -21.73 16 19 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H 0.08 1.80 6.89 -51.93 -0.36 1.44 16 24 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 27 H 0.05 0.87 5.71 -51.93 -0.30 0.58 16 28 H 0.08 1.82 6.73 -51.93 -0.35 1.47 16 29 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.36 7.14 -51.93 -0.37 0.99 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 274.06 15.07 4.13 4.13 Total: -1.00 -31.47 274.06 -4.51 -35.98 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.66 Total: 1.26 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.33 Total: 4.97 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.21 Total: -35.95 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.07 Total: -17.34 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.70 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.47 -4.51 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303826208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.619 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds