Wall clock time and date at job start Mon Mar 30 2020 00:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 C 1.52997 * 109.47129 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.41382 * 126.58348 * 90.00455 * 17 16 15 19 19 C 1.34513 * 106.84480 * 179.97438 * 18 17 16 20 20 O 1.34305 * 108.41902 * 359.97438 * 19 18 17 21 21 C 1.34305 * 109.47403 * 359.77463 * 20 19 18 22 22 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 23 23 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 24 24 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 25 25 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 26 26 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 27 27 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 28 28 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 29 29 H 1.08998 * 109.47688 * 300.00148 * 16 15 13 30 30 H 1.08999 * 109.46959 * 60.00488 * 16 15 13 31 31 H 1.08001 * 126.57533 * 359.91813 * 18 17 16 32 32 H 1.08001 * 125.78947 * 180.02562 * 19 18 17 33 33 H 1.08005 * 125.78725 * 180.23502 * 21 20 19 34 34 H 1.08998 * 113.77112 * 221.06054 * 22 12 11 35 35 H 1.09000 * 113.87384 * 89.66748 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 6 8.6376 -1.8967 -2.2447 17 6 9.4142 -0.9918 -3.1662 18 6 10.2004 0.1210 -2.7888 19 6 10.7125 0.6380 -3.9201 20 8 10.2810 -0.0988 -4.9568 21 6 9.4976 -1.0918 -4.5050 22 6 4.1349 -2.5980 0.0092 23 1 -0.4850 -0.8369 -0.0739 24 1 3.6757 0.4772 1.2467 25 1 3.6421 -1.0897 -2.0898 26 1 4.6935 0.1113 -1.2190 27 1 6.7227 -1.2971 -3.0293 28 1 7.2753 -0.3455 -1.6303 29 1 9.1369 -1.9444 -1.2770 30 1 8.5849 -2.8964 -2.6760 31 1 10.3586 0.4864 -1.7849 32 1 11.3613 1.4991 -3.9839 33 1 9.0142 -1.8416 -5.1137 34 1 4.5159 -2.9842 0.9546 35 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331976192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:30 Heat of formation + Delta-G solvation = -54.695342 kcal Electronic energy + Delta-G solvation = -19638.014210 eV Core-core repulsion = 16410.417146 eV Total energy + Delta-G solvation = -3227.597064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.41538 -41.40351 -39.41110 -36.18838 -35.77484 -34.64995 -32.52472 -30.81308 -29.76318 -27.51923 -26.87357 -25.00877 -22.43991 -21.83551 -21.03522 -20.15411 -19.88046 -18.51281 -17.82150 -17.70459 -17.01660 -16.90986 -16.55581 -16.06332 -15.43558 -15.26248 -15.11730 -14.43878 -14.32851 -13.98008 -13.86413 -13.64198 -13.38534 -13.14502 -13.07363 -12.93870 -12.50196 -12.09792 -11.92371 -11.67638 -11.29381 -11.10454 -10.93671 -10.56837 -10.37977 -9.68691 -9.41069 -8.81782 -6.60435 0.90169 1.39371 1.47439 1.58507 1.63314 1.63970 1.93906 2.34965 2.41147 2.84692 3.23929 3.52446 3.81425 3.90343 4.01665 4.14537 4.20691 4.31472 4.37504 4.42556 4.56034 4.62661 4.68309 4.79653 4.81863 4.88410 4.94157 5.10866 5.23372 5.36165 5.56626 5.61073 5.89758 6.24013 6.37432 6.72246 6.79162 7.08971 7.25862 8.52911 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.004525 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.184708 B = 6186.038690 C = 6788.304421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 1.064 2.936 4 H -0.258 1.258 5 H -0.223 1.223 6 H -0.283 1.283 7 C -0.616 4.616 8 H 0.036 0.964 9 C 0.185 3.815 10 O -0.563 6.563 11 C 0.075 3.925 12 N -0.636 5.636 13 C 0.524 3.476 14 O -0.595 6.595 15 C -0.116 4.116 16 C -0.025 4.025 17 C -0.194 4.194 18 C -0.229 4.229 19 C -0.039 4.039 20 O -0.189 6.189 21 C -0.042 4.042 22 C 0.119 3.881 23 H 0.258 0.742 24 H 0.363 0.637 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.235 0.765 33 H 0.224 0.776 34 H 0.064 0.936 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 4.391 -9.492 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.884 3.116 4 H -0.184 1.184 5 H -0.146 1.146 6 H -0.210 1.210 7 C -0.654 4.654 8 H 0.054 0.946 9 C 0.144 3.856 10 O -0.373 6.373 11 C -0.047 4.047 12 N -0.370 5.370 13 C 0.316 3.684 14 O -0.477 6.477 15 C -0.156 4.156 16 C -0.063 4.063 17 C -0.195 4.195 18 C -0.248 4.248 19 C -0.106 4.106 20 O -0.085 6.085 21 C -0.109 4.109 22 C -0.003 4.003 23 H 0.067 0.933 24 H 0.214 0.786 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.252 0.748 33 H 0.240 0.760 34 H 0.082 0.918 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.045 4.930 -9.401 21.804 hybrid contribution -1.024 -1.777 0.412 2.092 sum 18.021 3.153 -8.988 20.384 Atomic orbital electron populations 1.70912 1.08099 1.30392 1.46633 1.27325 0.96316 1.06391 0.91197 0.83975 0.76484 0.71745 0.79355 1.18422 1.14629 1.20967 1.22405 0.91748 0.94951 1.56280 0.94568 1.20527 0.91478 0.89900 0.83662 1.86440 1.76075 1.26421 1.48406 1.24549 0.88431 0.91230 1.00477 1.50185 1.09908 1.28692 1.48225 1.21121 0.80282 0.85799 0.81179 1.90630 1.69557 1.30927 1.56590 1.21580 0.95340 0.99080 0.99563 1.19535 0.91650 0.96897 0.98196 1.20502 1.04099 1.00220 0.94705 1.22034 1.03070 0.98875 1.00868 1.24671 1.02780 0.99202 0.83905 1.84082 1.52302 1.35204 1.36884 1.24347 0.98068 0.93942 0.94583 1.23190 0.86555 0.96476 0.94117 0.93287 0.78597 0.87971 0.88411 0.87103 0.87923 0.91667 0.90815 0.82776 0.74848 0.75972 0.91772 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.70 21.45 0.29 -53.26 16 2 C -0.01 -0.63 5.47 84.66 0.46 -0.17 16 3 Si 1.06 41.64 24.79 68.60 1.70 43.34 16 4 H -0.26 -9.42 6.95 99.48 0.69 -8.73 16 5 H -0.22 -7.04 4.86 99.48 0.48 -6.55 16 6 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.62 -31.98 9.04 25.60 0.23 -31.75 16 8 H 0.04 2.07 8.04 -2.91 -0.02 2.05 16 9 C 0.19 8.15 1.06 -10.88 -0.01 8.14 16 10 O -0.56 -24.88 13.42 -148.98 -2.00 -26.88 16 11 C 0.08 2.72 6.78 86.48 0.59 3.31 16 12 N -0.64 -24.03 3.61 -840.24 -3.03 -27.06 16 13 C 0.52 18.72 8.06 87.66 0.71 19.43 16 14 O -0.59 -25.27 16.71 -3.03 -0.05 -25.32 16 15 C -0.12 -2.96 5.43 29.85 0.16 -2.80 16 16 C -0.02 -0.60 5.02 29.85 0.15 -0.45 16 17 C -0.19 -4.05 5.42 -19.94 -0.11 -4.15 16 18 C -0.23 -4.30 10.87 22.19 0.24 -4.06 16 19 C -0.04 -0.60 12.09 66.97 0.81 0.21 16 20 O -0.19 -3.51 10.65 -2.53 -0.03 -3.54 16 21 C -0.04 -0.76 12.01 66.97 0.80 0.04 16 22 C 0.12 5.01 8.23 86.48 0.71 5.72 16 23 H 0.26 15.20 8.72 -92.70 -0.81 14.39 16 24 H 0.36 14.35 4.23 -74.05 -0.31 14.04 16 25 H 0.10 3.51 8.09 -2.39 -0.02 3.49 16 26 H 0.10 3.05 6.54 -2.38 -0.02 3.04 16 27 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.10 2.42 8.14 -2.38 -0.02 2.41 16 29 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.22 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.09 3.78 8.09 -2.39 -0.02 3.76 16 Total: -1.00 -68.71 299.76 2.15 -66.57 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.51 Total: 32.69 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.75 Total: -6.53 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.74 Total: -80.33 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.08 Total: -55.74 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.70 Total: 43.34 kcal Total: -68.71 2.15 -66.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331976192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.871 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds