Wall clock time and date at job start Mon Mar 30 2020 00:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48501 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47489 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.47042 * 60.00239 * 3 2 1 7 7 C 1.40051 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.46366 * 119.99927 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00075 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00008 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00083 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47374 * 324.99398 * 12 11 9 14 14 C 1.53000 * 109.47631 * 84.99376 * 12 11 9 15 15 C 1.52997 * 109.47060 * 59.99933 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 20 20 C 1.52997 * 109.47232 * 179.97438 * 18 17 16 21 21 F 1.39898 * 109.47062 * 180.02562 * 20 18 17 22 22 F 1.39900 * 109.47435 * 300.00122 * 20 18 17 23 23 F 1.39905 * 109.46849 * 60.00303 * 20 18 17 24 24 H 0.97004 * 120.00493 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99750 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.47398 * 180.02562 * 14 12 11 27 27 H 1.09001 * 109.47194 * 300.00282 * 14 12 11 28 28 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4804 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9491 -3.6476 -0.0017 12 6 1.2167 -4.9164 -0.0022 13 1 0.3058 -4.8104 0.5870 14 6 0.8532 -5.2949 -1.4394 15 6 2.1317 -5.4438 -2.2665 16 6 3.0088 -6.5392 -1.6569 17 6 3.3723 -6.1607 -0.2196 18 6 2.0937 -6.0118 0.6074 19 1 1.5488 -6.9558 0.6070 20 6 2.4572 -5.6340 2.0448 21 9 1.2882 -5.4984 2.8011 22 9 3.2589 -6.6360 2.6019 23 9 3.1569 -4.4225 2.0457 24 1 -0.4851 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0013 26 1 0.3078 -6.2387 -1.4398 27 1 0.2284 -4.5145 -1.8738 28 1 1.8729 -5.7130 -3.2905 29 1 2.6767 -4.4998 -2.2661 30 1 3.9199 -6.6450 -2.2459 31 1 2.4639 -7.4832 -1.6573 32 1 3.9172 -5.2167 -0.2193 33 1 3.9968 -6.9414 0.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335558015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:23 Heat of formation + Delta-G solvation = -211.662196 kcal Electronic energy + Delta-G solvation = -21738.765217 eV Core-core repulsion = 17962.504820 eV Total energy + Delta-G solvation = -3776.260398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.75617 -47.28498 -47.14697 -39.13489 -36.38676 -32.77672 -32.09413 -31.44254 -29.43890 -26.21695 -25.05477 -22.49780 -21.69582 -20.61527 -18.59007 -17.98765 -17.89032 -17.50138 -16.97606 -15.43100 -14.88565 -14.72500 -14.34356 -14.08913 -13.92943 -13.82817 -13.61048 -13.35619 -13.32127 -13.25014 -12.67417 -12.45770 -12.10748 -11.92948 -11.76340 -11.48176 -11.16758 -11.05101 -10.98864 -10.44355 -10.38211 -10.18380 -10.12463 -9.89033 -8.83811 -7.60140 -7.51235 -6.16509 -4.60953 3.06974 3.14446 3.22850 3.27219 4.02888 4.13255 4.23205 4.32942 4.60565 4.81205 4.91040 4.95864 5.10632 5.29904 5.39935 5.45983 5.56996 5.74010 5.83423 5.87108 6.02576 6.11010 6.12883 6.35897 6.50035 6.64097 6.72032 7.46154 7.93975 8.08763 8.35004 9.05527 9.53756 10.62136 10.81015 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.022400 B = 0.007190 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.711342 B = 3893.118508 C = 4359.418232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.758 5.758 12 C 0.159 3.841 13 H 0.087 0.913 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.139 4.139 19 H 0.114 0.886 20 C 0.454 3.546 21 F -0.183 7.183 22 F -0.194 7.194 23 F -0.169 7.169 24 H 0.267 0.733 25 H 0.382 0.618 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -12.570 -1.021 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.363 3.637 10 O -0.462 6.462 11 N -0.416 5.416 12 C 0.052 3.948 13 H 0.105 0.895 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.159 4.159 19 H 0.132 0.868 20 C 0.400 3.600 21 F -0.164 7.164 22 F -0.176 7.176 23 F -0.150 7.150 24 H 0.078 0.922 25 H 0.216 0.784 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.685 -12.440 -0.976 13.712 hybrid contribution 0.955 0.824 0.348 1.308 sum 6.640 -11.615 -0.628 13.394 Atomic orbital electron populations 1.70027 1.06993 1.27057 1.35566 1.25691 0.94595 1.00222 0.92664 0.86353 0.80552 0.81917 0.78153 1.18794 1.20235 1.20209 1.20890 0.93570 0.89353 1.54095 0.91506 1.18170 0.87160 0.82325 0.76064 1.90597 1.14045 1.86730 1.54849 1.46341 1.08634 1.04130 1.82454 1.20433 0.94888 0.83629 0.95846 0.89488 1.21869 0.97464 1.01242 0.95636 1.21516 0.96695 0.99186 0.98342 1.21469 0.99927 0.98925 0.94500 1.21588 0.94990 1.03043 0.95895 1.22828 1.00924 1.03059 0.89120 0.86817 1.20569 0.74551 0.74829 0.90027 1.93179 1.48610 1.95728 1.78888 1.93130 1.74976 1.61668 1.87828 1.93205 1.79379 1.45644 1.96787 0.92243 0.78435 0.92394 0.90369 0.92351 0.90958 0.91607 0.91999 0.90378 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.83 55.55 0.66 -22.34 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.26 9.54 -35.63 -0.34 -15.60 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.51 7.71 -12.99 -0.10 15.41 16 10 O -0.58 -18.32 14.68 5.20 0.08 -18.25 16 11 N -0.76 -16.26 2.95 -55.22 -0.16 -16.42 16 12 C 0.16 2.87 2.11 -67.93 -0.14 2.73 16 13 H 0.09 1.83 7.24 -51.93 -0.38 1.46 16 14 C -0.12 -1.98 5.60 -26.73 -0.15 -2.13 16 15 C -0.12 -1.63 5.77 -26.73 -0.15 -1.78 16 16 C -0.11 -1.21 5.92 -26.73 -0.16 -1.36 16 17 C -0.12 -1.40 4.79 -26.73 -0.13 -1.53 16 18 C -0.14 -1.95 2.05 -90.62 -0.19 -2.13 16 19 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 20 C 0.45 7.25 2.69 37.16 0.10 7.35 16 21 F -0.18 -3.26 16.80 2.25 0.04 -3.23 16 22 F -0.19 -2.81 16.80 2.25 0.04 -2.77 16 23 F -0.17 -3.07 14.27 2.25 0.03 -3.03 16 24 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 25 H 0.38 7.49 5.71 -40.82 -0.23 7.26 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.12 7.60 -51.93 -0.39 0.73 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 33 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -32.88 279.41 -5.30 -38.18 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.81 Total: 5.06 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.36 Total: 3.32 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.49 Total: -38.77 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.08 Total: -18.25 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 0.11 Total: -9.03 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.88 -5.30 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335558015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.481 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds