Wall clock time and date at job start Mon Mar 30 2020 00:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48501 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47489 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.47042 * 60.00239 * 3 2 1 7 7 C 1.40051 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.46366 * 119.99927 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00075 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00008 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00083 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47374 * 324.99398 * 12 11 9 14 14 C 1.53000 * 109.47631 * 84.99376 * 12 11 9 15 15 C 1.52997 * 109.47060 * 59.99933 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 20 20 C 1.52997 * 109.47232 * 179.97438 * 18 17 16 21 21 F 1.39898 * 109.47062 * 180.02562 * 20 18 17 22 22 F 1.39900 * 109.47435 * 300.00122 * 20 18 17 23 23 F 1.39905 * 109.46849 * 60.00303 * 20 18 17 24 24 H 0.97004 * 120.00493 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99750 * 359.97438 * 11 9 7 26 26 H 1.09002 * 109.47398 * 180.02562 * 14 12 11 27 27 H 1.09001 * 109.47194 * 300.00282 * 14 12 11 28 28 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4804 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9491 -3.6476 -0.0017 12 6 1.2167 -4.9164 -0.0022 13 1 0.3058 -4.8104 0.5870 14 6 0.8532 -5.2949 -1.4394 15 6 2.1317 -5.4438 -2.2665 16 6 3.0088 -6.5392 -1.6569 17 6 3.3723 -6.1607 -0.2196 18 6 2.0937 -6.0118 0.6074 19 1 1.5488 -6.9558 0.6070 20 6 2.4572 -5.6340 2.0448 21 9 1.2882 -5.4984 2.8011 22 9 3.2589 -6.6360 2.6019 23 9 3.1569 -4.4225 2.0457 24 1 -0.4851 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0013 26 1 0.3078 -6.2387 -1.4398 27 1 0.2284 -4.5145 -1.8738 28 1 1.8729 -5.7130 -3.2905 29 1 2.6767 -4.4998 -2.2661 30 1 3.9199 -6.6450 -2.2459 31 1 2.4639 -7.4832 -1.6573 32 1 3.9172 -5.2167 -0.2193 33 1 3.9968 -6.9414 0.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335558015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:22 Heat of formation + Delta-G solvation = -233.287213 kcal Electronic energy + Delta-G solvation = -21739.702949 eV Core-core repulsion = 17962.504820 eV Total energy + Delta-G solvation = -3777.198129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.07375 -48.57648 -48.52293 -40.58473 -38.28529 -34.74004 -33.88067 -32.70160 -30.90454 -28.22572 -26.39774 -23.76078 -22.90033 -22.33503 -20.08533 -19.51339 -19.18925 -19.12260 -18.38882 -17.48455 -16.39128 -16.23593 -15.69407 -15.48159 -15.40209 -15.18596 -14.95962 -14.73421 -14.69562 -14.56783 -14.24469 -14.23056 -13.49909 -13.39053 -13.16131 -12.86778 -12.77639 -12.70419 -12.57985 -12.21839 -11.98779 -11.41868 -11.39303 -11.10011 -10.93051 -9.81882 -9.41409 -8.27643 -6.82727 1.38481 1.38913 1.56256 1.81152 2.24117 2.49495 2.77842 2.96445 3.06173 3.22010 3.63091 3.77423 3.81090 4.06376 4.16757 4.25714 4.35678 4.48328 4.60252 4.72353 4.93294 5.02628 5.13576 5.20648 5.30279 5.33092 5.41137 5.54824 5.90946 6.25314 6.30217 6.89087 7.56505 8.52750 8.70572 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.022400 B = 0.007190 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.711342 B = 3893.118508 C = 4359.418232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.545 3.455 10 O -0.629 6.629 11 N -0.743 5.743 12 C 0.153 3.847 13 H 0.048 0.952 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.126 4.126 19 H 0.150 0.850 20 C 0.449 3.551 21 F -0.199 7.199 22 F -0.181 7.181 23 F -0.186 7.186 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -13.952 -1.623 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.100 0.900 9 C 0.349 3.651 10 O -0.516 6.516 11 N -0.399 5.399 12 C 0.047 3.953 13 H 0.066 0.934 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.138 4.138 17 C -0.154 4.154 18 C -0.146 4.146 19 H 0.167 0.833 20 C 0.395 3.605 21 F -0.180 7.180 22 F -0.162 7.162 23 F -0.168 7.168 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.006 -13.876 -1.581 16.097 hybrid contribution 0.226 1.164 0.566 1.314 sum 8.232 -12.711 -1.015 15.178 Atomic orbital electron populations 1.70190 1.09370 1.28673 1.36830 1.26913 0.95509 1.04787 0.91350 0.85038 0.79393 0.75770 0.78503 1.17141 1.19195 1.19551 1.21419 0.94491 0.90354 1.54635 0.90030 1.18446 0.86725 0.84218 0.75670 1.90551 1.16114 1.87894 1.57076 1.45939 1.09034 1.04125 1.80833 1.20561 0.94082 0.83464 0.97183 0.93363 1.21796 0.98673 1.01095 0.94142 1.21496 0.95421 0.99393 0.99120 1.21451 1.00525 0.98447 0.93382 1.21672 0.93741 1.03445 0.96494 1.22847 1.01768 1.02386 0.87556 0.83272 1.20928 0.74095 0.74505 0.90974 1.93152 1.49590 1.95814 1.79469 1.93152 1.74494 1.60794 1.87759 1.93168 1.79730 1.46994 1.96894 0.91721 0.77204 0.89085 0.95093 0.90643 0.93597 0.89282 0.89418 0.91799 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.03 11.83 21.84 0.26 -50.78 16 2 C 0.03 1.66 5.50 85.31 0.47 2.13 16 3 Si 0.99 41.98 29.56 68.60 2.03 44.01 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.57 -33.03 9.54 24.83 0.24 -32.79 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.55 31.69 7.71 86.36 0.67 32.36 16 10 O -0.63 -42.20 14.68 -4.33 -0.06 -42.26 16 11 N -0.74 -32.81 2.95 -446.82 -1.32 -34.13 16 12 C 0.15 5.60 2.11 44.99 0.09 5.70 16 13 H 0.05 2.14 7.24 -2.39 -0.02 2.12 16 14 C -0.12 -3.78 5.60 30.59 0.17 -3.61 16 15 C -0.12 -2.95 5.77 30.59 0.18 -2.78 16 16 C -0.10 -1.75 5.92 30.60 0.18 -1.57 16 17 C -0.12 -2.36 4.79 30.60 0.15 -2.21 16 18 C -0.13 -3.26 2.05 -10.79 -0.02 -3.28 16 19 H 0.15 2.87 8.14 -2.39 -0.02 2.85 16 20 C 0.45 13.82 2.69 71.98 0.19 14.01 16 21 F -0.20 -7.14 16.80 44.97 0.76 -6.38 16 22 F -0.18 -4.76 16.80 44.97 0.76 -4.01 16 23 F -0.19 -6.74 14.27 44.97 0.64 -6.09 16 24 H 0.27 15.36 8.29 -92.71 -0.77 14.60 16 25 H 0.39 15.58 5.71 -92.71 -0.53 15.05 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.50 6.18 -2.39 -0.01 1.49 16 33 H 0.10 1.57 7.80 -2.39 -0.02 1.55 16 Total: -1.00 -76.34 279.41 5.98 -70.36 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.61 Total: 21.33 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 2.31 Total: 7.96 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.06 Total: -84.91 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.06 Total: -42.26 kcal Atomic # 9 Polarization: -18.64 SS G_CDS: 2.15 Total: -16.49 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -76.34 5.98 -70.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335558015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.929 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds