Wall clock time and date at job start Mon Mar 30 2020 00:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40357 * 126.44354 * 2 1 4 4 C 1.36548 * 106.71181 * 179.97438 * 3 2 1 5 5 C 1.46657 * 125.99150 * 179.97438 * 4 3 2 6 6 O 1.21694 * 119.99544 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99913 * 179.97438 * 5 4 3 8 8 C 1.47586 * 134.48934 * 179.97438 * 7 5 4 9 9 C 1.53949 * 86.11504 * 155.36070 * 8 7 5 10 10 O 1.42903 * 113.74102 * 269.15490 * 9 8 7 11 11 C 1.50694 * 113.74088 * 137.95266 * 9 8 7 12 12 H 1.08000 * 120.00563 * 1.92388 * 11 9 8 13 13 C 1.37885 * 119.99902 * 181.92552 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47807 * 134.45633 * 359.87026 * 7 5 4 20 20 O 1.34916 * 108.02046 * 0.22118 * 4 3 2 21 21 C 1.33928 * 109.38297 * 359.62593 * 20 4 3 22 22 C 1.50709 * 125.61534 * 180.16733 * 21 20 4 23 23 H 1.08999 * 109.46943 * 90.03102 * 1 2 3 24 24 H 1.09002 * 109.47330 * 210.02949 * 1 2 3 25 25 H 1.09007 * 109.47421 * 330.03161 * 1 2 3 26 26 H 1.08009 * 126.64674 * 359.95599 * 3 2 1 27 27 H 1.08993 * 113.76952 * 41.05857 * 8 7 5 28 28 H 1.08995 * 113.86700 * 269.67206 * 8 7 5 29 29 H 0.96700 * 113.99800 * 178.07503 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 31 31 H 1.08995 * 113.77163 * 90.38050 * 19 7 5 32 32 H 1.09005 * 113.83876 * 318.91036 * 19 7 5 33 33 H 1.08994 * 109.47215 * 270.24506 * 22 21 20 34 34 H 1.09002 * 109.46836 * 30.24626 * 22 21 20 35 35 H 1.09004 * 109.47128 * 150.24327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 0.0006 5 6 4.8379 1.4940 0.0003 6 8 4.7470 2.7076 -0.0011 7 7 6.0521 0.9091 0.0014 8 6 7.4408 1.4087 0.0011 9 6 7.8151 0.0606 0.6435 10 8 7.7886 0.0771 2.0722 11 6 9.0762 -0.5476 0.0863 12 1 9.6408 -0.0224 -0.6698 13 6 9.5093 -1.7749 0.5417 14 7 8.8220 -2.4144 1.4627 15 14 11.0721 -2.5292 -0.1496 16 1 10.7382 -3.3638 -1.3316 17 1 12.0063 -1.4483 -0.5548 18 1 11.7144 -3.3753 0.8882 19 6 6.5267 -0.4907 0.0055 20 8 3.5857 -0.6805 -0.0040 21 6 2.3097 -1.0870 0.0007 22 6 1.8454 -2.5208 0.0015 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3634 -0.8897 0.5143 25 1 -0.3634 0.8903 0.5134 26 1 2.0266 2.1625 -0.0007 27 1 7.5994 2.2661 0.6551 28 1 7.8580 1.5511 -0.9957 29 1 7.9944 -0.7756 2.4792 30 1 9.1265 -3.2780 1.7828 31 1 6.6736 -0.9077 -0.9907 32 1 5.9569 -1.1472 0.6632 33 1 1.7336 -2.8670 -1.0260 34 1 2.5802 -3.1404 0.5157 35 1 0.8867 -2.5921 0.5153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336521179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:01 Heat of formation + Delta-G solvation = -61.551629 kcal Electronic energy + Delta-G solvation = -20136.960671 eV Core-core repulsion = 16909.066296 eV Total energy + Delta-G solvation = -3227.894375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.77439 -41.14176 -39.12607 -35.95404 -35.39751 -34.18358 -33.04130 -30.76159 -29.53037 -27.90650 -27.10894 -26.35266 -23.23954 -22.20863 -21.23772 -20.00343 -19.33762 -18.32208 -17.63392 -17.52398 -17.01523 -16.39377 -16.20502 -15.95558 -15.06736 -14.67340 -14.49937 -14.37585 -14.08525 -14.02630 -13.82504 -13.65272 -13.59786 -13.45512 -12.97720 -12.91362 -12.76779 -12.45148 -12.26778 -12.25915 -11.68709 -11.17116 -10.76827 -10.69158 -10.36220 -9.81736 -9.33985 -8.28559 -6.46349 -0.03979 1.25443 1.46527 1.48941 1.54351 1.59824 1.94045 2.04438 2.39939 2.93421 3.33043 3.67196 3.77407 3.82892 4.09493 4.25125 4.36079 4.43911 4.52144 4.60497 4.65343 4.68302 4.71771 4.83875 4.89761 4.91426 5.06659 5.08521 5.09666 5.17061 5.58388 5.70120 5.87967 5.93229 6.56137 6.59893 6.88787 7.26802 7.38923 8.78233 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.005351 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.508417 B = 5231.076505 C = 5959.141803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.199 4.199 3 C -0.119 4.119 4 C -0.103 4.103 5 C 0.604 3.396 6 O -0.576 6.576 7 N -0.628 5.628 8 C 0.115 3.885 9 C 0.221 3.779 10 O -0.586 6.586 11 C -0.558 4.558 12 H 0.076 0.924 13 C 0.033 3.967 14 N -0.917 5.917 15 Si 0.972 3.028 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.282 1.282 19 C 0.100 3.900 20 O -0.173 6.173 21 C 0.009 3.991 22 C -0.076 4.076 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.164 0.836 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.388 0.612 30 H 0.276 0.724 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 -3.364 -3.800 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.200 4.200 3 C -0.139 4.139 4 C -0.154 4.154 5 C 0.396 3.604 6 O -0.460 6.460 7 N -0.359 5.359 8 C -0.007 4.007 9 C 0.180 3.820 10 O -0.397 6.397 11 C -0.596 4.596 12 H 0.094 0.906 13 C -0.168 4.168 14 N -0.557 5.557 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.208 1.208 19 C -0.022 4.022 20 O -0.070 6.070 21 C -0.043 4.043 22 C -0.132 4.132 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.181 0.819 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.242 0.758 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.823 -2.388 -3.778 14.527 hybrid contribution 1.066 -0.627 -0.029 1.237 sum -12.756 -3.015 -3.807 13.649 Atomic orbital electron populations 1.20288 0.85441 1.04067 1.03396 1.20610 0.99344 0.90323 1.09772 1.22051 0.90025 1.01498 1.00359 1.21763 0.95769 0.80952 1.16958 1.16622 0.81059 0.85906 0.76841 1.90756 1.86324 1.13414 1.55520 1.50221 1.04661 1.11758 1.69288 1.23569 0.77224 0.98703 1.01187 1.20118 0.91831 0.90524 0.79516 1.86048 1.93336 1.39996 1.20362 1.21709 1.09443 1.04507 1.23899 0.90594 1.25788 0.99969 0.96584 0.94419 1.69480 1.40379 1.16132 1.29703 0.85343 0.78775 0.78181 0.78067 1.19665 1.19345 1.20783 1.24171 0.95168 0.81810 1.01049 1.84111 1.30514 1.21386 1.70951 1.23643 0.79848 0.99473 1.01349 1.20659 1.02972 0.84195 1.05358 0.90022 0.89257 0.90851 0.81868 0.91381 0.87118 0.75784 0.91391 0.89236 0.92047 0.87793 0.90341 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.17 71.23 0.72 -0.45 16 2 C -0.20 -5.13 6.14 -20.07 -0.12 -5.25 16 3 C -0.12 -3.88 10.57 22.39 0.24 -3.65 16 4 C -0.10 -4.09 7.07 24.07 0.17 -3.92 16 5 C 0.60 27.81 8.02 86.44 0.69 28.50 16 6 O -0.58 -28.55 17.59 -4.33 -0.08 -28.62 16 7 N -0.63 -29.04 3.61 -844.31 -3.05 -32.09 16 8 C 0.11 5.20 8.23 86.49 0.71 5.91 16 9 C 0.22 10.98 1.40 -10.87 -0.02 10.96 16 10 O -0.59 -31.43 13.49 -148.98 -2.01 -33.44 16 11 C -0.56 -28.09 8.61 25.60 0.22 -27.87 16 12 H 0.08 3.68 7.81 -2.91 -0.02 3.65 16 13 C 0.03 1.64 5.40 84.66 0.46 2.10 16 14 N -0.92 -46.61 11.20 21.45 0.24 -46.37 16 15 Si 0.97 39.27 29.54 68.60 2.03 41.30 16 16 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 19 C 0.10 4.64 7.33 86.45 0.63 5.28 16 20 O -0.17 -6.39 9.15 -5.03 -0.05 -6.44 16 21 C 0.01 0.25 7.31 24.97 0.18 0.43 16 22 C -0.08 -1.25 10.21 71.24 0.73 -0.53 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 0.97 7.13 -2.39 -0.02 0.96 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.16 4.93 8.06 -2.91 -0.02 4.90 16 27 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.11 4.47 8.09 -2.39 -0.02 4.45 16 29 H 0.39 20.93 6.60 -74.06 -0.49 20.44 16 30 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.09 3.95 8.09 -2.39 -0.02 3.94 16 32 H 0.06 2.94 7.54 -2.38 -0.02 2.93 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 1.23 7.13 -2.39 -0.02 1.22 16 Total: -1.00 -64.20 305.82 2.33 -61.87 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.63 Total: 32.29 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.62 Total: 11.51 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.81 Total: -78.46 kcal Atomic # 8 Polarization: -66.37 SS G_CDS: -2.13 Total: -68.50 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -64.20 2.33 -61.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336521179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.317 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds