Wall clock time and date at job start Mon Mar 30 2020 00:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46974 * 240.00189 * 3 2 1 5 5 H 1.48497 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47249 * 119.99866 * 3 2 1 7 7 C 1.37876 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99492 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46562 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99661 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00294 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00014 * 179.97438 * 12 11 10 15 15 O 1.42894 * 109.47481 * 180.02562 * 14 12 11 16 16 C 1.35995 * 117.00081 * 179.97438 * 15 14 12 17 17 C 1.38558 * 120.07405 * 359.96402 * 16 15 14 18 18 C 1.38247 * 119.99917 * 180.02562 * 17 16 15 19 19 C 1.38255 * 120.14468 * 359.97438 * 18 17 16 20 20 C 1.38241 * 120.14765 * 0.02562 * 19 18 17 21 21 C 1.38563 * 119.99765 * 359.97368 * 20 19 18 22 22 O 1.35999 * 120.07024 * 180.02562 * 21 20 19 23 23 H 0.96999 * 119.99990 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47316 * 60.00710 * 9 7 2 25 25 H 1.08994 * 109.47267 * 299.99511 * 9 7 2 26 26 H 1.08991 * 109.47069 * 59.99950 * 10 9 7 27 27 H 1.09001 * 109.47190 * 300.00055 * 10 9 7 28 28 H 0.97002 * 119.99979 * 359.97438 * 11 10 9 29 29 H 1.09003 * 109.46784 * 60.00235 * 14 12 11 30 30 H 1.09001 * 109.47168 * 300.00423 * 14 12 11 31 31 H 1.07995 * 120.00001 * 0.03822 * 17 16 15 32 32 H 1.07998 * 119.92703 * 180.27362 * 18 17 16 33 33 H 1.08004 * 119.92416 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.99988 * 180.02562 * 20 19 18 35 35 H 0.96696 * 114.00342 * 90.00115 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0018 13 8 3.3994 -6.0980 -0.0014 14 6 1.4331 -7.4031 -0.0018 15 8 2.3617 -8.4892 -0.0020 16 6 1.8418 -9.7459 -0.0015 17 6 0.4684 -9.9292 -0.0001 18 6 -0.0583 -11.2074 0.0009 19 6 0.7825 -12.3049 0.0001 20 6 2.1537 -12.1290 -0.0013 21 6 2.6881 -10.8505 -0.0023 22 8 4.0368 -10.6758 -0.0041 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.5427 -4.9308 -0.0011 29 1 0.8061 -7.4605 -0.8916 30 1 0.8068 -7.4611 0.8884 31 1 -0.1905 -9.0736 -0.0001 32 1 -1.1290 -11.3489 -0.0026 33 1 0.3671 -13.3018 0.0013 34 1 2.8083 -12.9879 -0.0023 35 1 4.4258 -10.6255 -0.8880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345152713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:15 Heat of formation + Delta-G solvation = -98.064514 kcal Electronic energy + Delta-G solvation = -18729.645463 eV Core-core repulsion = 15500.167771 eV Total energy + Delta-G solvation = -3229.477692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68252 -39.29499 -37.70827 -36.66630 -34.92181 -32.92118 -30.68406 -30.51268 -29.60596 -27.89419 -24.69316 -22.94020 -22.51679 -21.07399 -20.29830 -18.98670 -17.87818 -17.07938 -16.51783 -16.45177 -15.91683 -15.77975 -15.10757 -14.79865 -14.58332 -14.50157 -14.18928 -13.58770 -13.17527 -12.81783 -12.42388 -12.36201 -12.32649 -11.67314 -11.29758 -11.26499 -11.03922 -10.77516 -10.68870 -10.38114 -9.86749 -9.53295 -9.26571 -9.15959 -8.63699 -8.42266 -8.37232 -6.12945 -4.16072 0.91987 1.08885 2.58768 2.80925 3.29526 3.33348 3.34537 3.36756 3.79698 4.00321 4.38726 4.54847 4.61239 4.75989 4.93594 4.95378 4.98580 5.06705 5.24256 5.29121 5.54810 5.91958 5.96986 6.16347 6.24080 6.28100 6.38619 6.66335 6.77406 6.99148 7.45779 7.55669 7.56767 7.84035 7.86494 8.22545 8.49806 8.89552 9.49057 10.98614 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.051727 B = 0.002856 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.172462 B = 9803.206016 C =10316.084805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.718 5.718 12 C 0.507 3.493 13 O -0.525 6.525 14 C 0.037 3.963 15 O -0.278 6.278 16 C 0.107 3.893 17 C -0.199 4.199 18 C -0.088 4.088 19 C -0.146 4.146 20 C -0.108 4.108 21 C 0.076 3.924 22 O -0.485 6.485 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -23.347 -1.664 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.291 3.709 13 O -0.401 6.401 14 C -0.041 4.041 15 O -0.190 6.190 16 C 0.061 3.939 17 C -0.218 4.218 18 C -0.106 4.106 19 C -0.164 4.164 20 C -0.127 4.127 21 C 0.030 3.970 22 O -0.294 6.294 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.507 -23.136 -1.051 23.209 hybrid contribution -0.350 1.018 -0.496 1.185 sum -1.856 -22.118 -1.547 22.249 Atomic orbital electron populations 1.69939 1.06103 1.27062 1.50226 1.24993 0.94908 0.99443 0.94897 0.86555 0.79514 0.82549 0.78830 1.20078 1.21222 1.20066 1.21008 0.93259 0.90338 1.51613 0.92233 1.19329 0.94173 0.91013 0.97917 1.21792 0.96106 0.80898 1.01086 1.46195 1.10598 1.06065 1.74121 1.19908 0.88319 0.84712 0.78005 1.90737 1.13578 1.87293 1.48506 1.22614 0.92239 0.85627 1.03665 1.86264 1.33774 1.10941 1.87995 1.19610 0.92192 0.84744 0.97397 1.21262 0.93232 0.99138 1.08146 1.20989 1.00089 0.91657 0.97836 1.20957 0.92744 0.99152 1.03572 1.21273 0.95819 0.95648 0.99919 1.17794 0.83197 0.89786 1.06183 1.84910 1.16248 1.94890 1.33376 0.92741 0.95857 0.95858 0.92296 0.92318 0.76754 0.89067 0.89033 0.84800 0.85389 0.85448 0.84722 0.75651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.98 5.56 -60.29 -0.33 -12.32 16 12 C 0.51 8.60 7.91 -10.99 -0.09 8.51 16 13 O -0.53 -11.38 16.50 -14.35 -0.24 -11.62 16 14 C 0.04 0.46 5.22 36.01 0.19 0.65 16 15 O -0.28 -4.13 9.45 -47.35 -0.45 -4.58 16 16 C 0.11 1.33 6.70 -39.12 -0.26 1.07 16 17 C -0.20 -1.92 9.04 -39.46 -0.36 -2.28 16 18 C -0.09 -0.71 10.04 -39.57 -0.40 -1.10 16 19 C -0.15 -1.14 10.04 -39.57 -0.40 -1.54 16 20 C -0.11 -0.98 9.98 -39.46 -0.39 -1.38 16 21 C 0.08 0.89 6.72 -39.12 -0.26 0.63 16 22 O -0.48 -5.89 13.29 -34.24 -0.46 -6.35 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.40 5.44 8.47 -40.82 -0.35 5.09 16 29 H 0.09 0.85 7.67 -51.93 -0.40 0.46 16 30 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 31 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.39 3.01 9.06 45.56 0.41 3.42 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -34.75 311.81 -7.16 -41.91 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.56 Total: 2.99 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.54 Total: -5.85 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.40 Total: -37.41 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.14 Total: -22.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.75 -7.16 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345152713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.155 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds