Wall clock time and date at job start Sun Mar 29 2020 23:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48492 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47406 * 300.00403 * 3 2 1 6 6 H 1.48509 * 109.47006 * 59.99951 * 3 2 1 7 7 C 1.40054 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00020 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99978 * 180.02562 * 9 7 2 12 12 C 1.46495 * 120.00156 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47086 * 324.99601 * 12 11 9 14 14 C 1.53004 * 109.47115 * 204.99617 * 12 11 9 15 15 C 1.53875 * 110.03268 * 62.40874 * 14 12 11 16 16 C 1.54262 * 106.59842 * 240.71524 * 15 14 12 17 17 C 1.54885 * 104.31137 * 336.32396 * 16 15 14 18 18 C 1.54268 * 110.03310 * 305.23932 * 14 12 11 19 19 C 1.53002 * 109.47193 * 84.99643 * 12 11 9 20 20 F 1.39904 * 109.46984 * 174.69930 * 19 12 11 21 21 F 1.39896 * 109.47254 * 294.69990 * 19 12 11 22 22 F 1.39902 * 109.47337 * 54.70286 * 19 12 11 23 23 H 0.96999 * 120.00327 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00026 * 359.97438 * 11 9 7 25 25 H 1.09007 * 110.01348 * 183.80096 * 14 12 11 26 26 H 1.09000 * 110.03162 * 121.42891 * 15 14 12 27 27 H 1.09002 * 110.07001 * 0.02562 * 15 14 12 28 28 H 1.08996 * 110.48479 * 95.06842 * 16 15 14 29 29 H 1.08999 * 110.48299 * 217.57799 * 16 15 14 30 30 H 1.09010 * 110.75369 * 156.32745 * 17 16 15 31 31 H 1.09003 * 110.75850 * 279.69046 * 17 16 15 32 32 H 1.08989 * 110.48670 * 261.57444 * 18 14 12 33 33 H 1.08998 * 110.48526 * 24.08720 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3464 0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8818 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9490 -3.6477 -0.0017 12 6 1.2165 -4.9164 -0.0022 13 1 0.3057 -4.8103 0.5869 14 6 2.0936 -6.0119 0.6074 15 6 2.4172 -5.6733 2.0731 16 6 3.9520 -5.5511 2.1687 17 6 4.4778 -6.3917 0.9788 18 6 3.4431 -6.0836 -0.1366 19 6 0.8531 -5.2949 -1.4395 20 9 0.2613 -6.5625 -1.4524 21 9 -0.0455 -4.3554 -1.9561 22 9 2.0113 -5.3130 -2.2241 23 1 -0.4850 0.8400 0.0004 24 1 2.9190 -3.6477 -0.0013 25 1 1.5832 -6.9734 0.5501 26 1 2.0647 -6.4709 2.7272 27 1 1.9493 -4.7288 2.3510 28 1 4.2589 -4.5103 2.0657 29 1 4.3092 -5.9615 3.1131 30 1 5.4752 -6.0640 0.6852 31 1 4.4759 -7.4535 1.2252 32 1 3.4292 -6.8847 -0.8755 33 1 3.6667 -5.1296 -0.6139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356949726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:41 Heat of formation + Delta-G solvation = -231.611706 kcal Electronic energy + Delta-G solvation = -21692.135770 eV Core-core repulsion = 17915.010297 eV Total energy + Delta-G solvation = -3777.125473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.02304 -48.53039 -48.48377 -40.36501 -38.54992 -35.21167 -34.42541 -31.46925 -29.57895 -28.42055 -27.64082 -23.98698 -22.30392 -21.46850 -20.63539 -19.44635 -19.38703 -19.10164 -18.45201 -17.51976 -16.59189 -16.38031 -15.91727 -15.43436 -15.34436 -15.10060 -14.94192 -14.71622 -14.64871 -14.52462 -14.27510 -14.17478 -13.93182 -13.36752 -13.07379 -12.79749 -12.63539 -12.01872 -11.97483 -11.93045 -11.82204 -11.80940 -11.50933 -11.32811 -10.95837 -9.91541 -9.74450 -8.31237 -6.87683 1.39437 1.40585 1.57955 1.81812 2.21566 2.45102 2.68480 2.89335 3.08692 3.40396 3.65287 3.68291 3.73128 3.87715 4.29534 4.32636 4.59307 4.59796 4.68327 4.79205 4.88777 5.03104 5.14430 5.29831 5.31259 5.32303 5.44654 5.54883 5.82263 5.97453 6.19834 6.85526 7.39868 8.43600 8.64125 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.007643 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.410380 B = 3662.462289 C = 4454.062589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.246 1.246 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.612 6.612 11 N -0.733 5.733 12 C 0.127 3.873 13 H 0.093 0.907 14 C -0.094 4.094 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.129 4.129 19 C 0.428 3.572 20 F -0.184 7.184 21 F -0.197 7.197 22 F -0.182 7.182 23 H 0.275 0.725 24 H 0.401 0.599 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -11.659 2.421 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.603 4.603 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.497 6.497 11 N -0.389 5.389 12 C 0.017 3.983 13 H 0.110 0.890 14 C -0.113 4.113 15 C -0.151 4.151 16 C -0.160 4.160 17 C -0.149 4.149 18 C -0.166 4.166 19 C 0.372 3.628 20 F -0.165 7.165 21 F -0.179 7.179 22 F -0.163 7.163 23 H 0.085 0.915 24 H 0.239 0.761 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.563 -11.564 2.402 14.589 hybrid contribution -0.046 0.807 -0.567 0.988 sum 8.517 -10.757 1.835 13.843 Atomic orbital electron populations 1.70176 1.09423 1.28926 1.36104 1.26925 0.95508 1.04838 0.91291 0.84997 0.79473 0.75587 0.78436 1.16883 1.19686 1.19289 1.21381 0.94728 0.89746 1.54451 0.89408 1.18668 0.87020 0.83970 0.76030 1.90605 1.15737 1.87340 1.56041 1.45926 1.09509 1.02845 1.80603 1.21803 0.99670 0.88745 0.88090 0.88951 1.22157 0.96202 0.96184 0.96742 1.22110 0.97609 1.01572 0.93819 1.22359 0.93829 1.00264 0.99527 1.22522 0.98057 1.00664 0.93691 1.22671 0.93485 1.02079 0.98390 1.21891 0.74315 0.73851 0.92741 1.93111 1.84722 1.41574 1.97136 1.93211 1.69402 1.66092 1.89163 1.93107 1.49180 1.96200 1.77854 0.91549 0.76139 0.87586 0.89623 0.93541 0.92506 0.89935 0.90423 0.89797 0.90542 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.41 11.83 21.84 0.26 -49.15 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 1.00 40.46 29.56 68.60 2.03 42.48 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.57 -31.31 9.54 24.83 0.24 -31.07 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.54 30.08 7.40 86.36 0.64 30.72 16 10 O -0.61 -39.58 13.59 -4.32 -0.06 -39.64 16 11 N -0.73 -31.37 4.20 -446.83 -1.88 -33.25 16 12 C 0.13 4.74 1.68 44.99 0.08 4.81 16 13 H 0.09 3.91 7.58 -2.39 -0.02 3.89 16 14 C -0.09 -2.49 2.65 -10.07 -0.03 -2.52 16 15 C -0.11 -2.79 6.22 31.32 0.19 -2.59 16 16 C -0.12 -2.52 6.82 31.67 0.22 -2.30 16 17 C -0.11 -2.02 6.93 32.00 0.22 -1.80 16 18 C -0.13 -3.02 4.54 31.79 0.14 -2.87 16 19 C 0.43 16.65 2.81 71.98 0.20 16.85 16 20 F -0.18 -6.25 16.54 44.97 0.74 -5.51 16 21 F -0.20 -9.63 15.84 44.97 0.71 -8.91 16 22 F -0.18 -6.61 14.67 44.97 0.66 -5.95 16 23 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 24 H 0.40 15.11 6.64 -92.71 -0.62 14.50 16 25 H 0.11 2.45 7.59 -2.38 -0.02 2.43 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.44 7.46 -2.39 -0.02 1.43 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.67 8.01 -2.39 -0.02 1.65 16 33 H 0.06 1.66 5.32 -2.39 -0.01 1.65 16 Total: -1.00 -71.29 281.08 5.37 -65.92 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.53 Total: 22.67 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 2.37 Total: 11.34 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -1.62 Total: -82.40 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.06 Total: -39.64 kcal Atomic # 9 Polarization: -22.49 SS G_CDS: 2.12 Total: -20.37 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -71.29 5.37 -65.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356949726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.695 kcal (2) G-P(sol) polarization free energy of solvation -71.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds