Wall clock time and date at job start Sun Mar 29 2020 23:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47103 * 274.98465 * 3 2 1 5 5 H 1.48500 * 109.47259 * 34.98570 * 3 2 1 6 6 H 1.48500 * 109.46931 * 154.98228 * 3 2 1 7 7 C 1.40043 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99999 * 186.14492 * 7 2 1 9 9 C 1.46372 * 120.00408 * 6.15267 * 7 2 1 10 10 O 1.21692 * 119.99945 * 353.93681 * 9 7 2 11 11 N 1.34775 * 120.00303 * 173.93811 * 9 7 2 12 12 C 1.46495 * 120.00047 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47588 * 34.99884 * 12 11 9 14 14 C 1.53002 * 109.47246 * 274.99758 * 12 11 9 15 15 O 1.42896 * 109.47360 * 295.00368 * 14 12 11 16 16 C 1.53006 * 109.47203 * 154.99944 * 12 11 9 17 17 C 1.50701 * 109.46890 * 294.99911 * 16 12 11 18 18 C 1.38268 * 119.94358 * 270.25438 * 17 16 12 19 19 C 1.38146 * 120.05503 * 180.25891 * 18 17 16 20 20 C 1.38733 * 119.93855 * 359.46751 * 19 18 17 21 21 O 1.35909 * 120.04995 * 180.29727 * 20 19 18 22 22 C 1.38727 * 119.89446 * 0.27719 * 20 19 18 23 23 C 1.38151 * 119.94271 * 0.02562 * 22 20 19 24 24 H 0.96996 * 120.00079 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99999 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46627 * 55.00344 * 14 12 11 27 27 H 1.08996 * 109.47294 * 175.00047 * 14 12 11 28 28 H 0.96696 * 114.00675 * 179.97438 * 15 14 12 29 29 H 1.08998 * 109.47247 * 174.99757 * 16 12 11 30 30 H 1.08997 * 109.46747 * 54.99759 * 16 12 11 31 31 H 1.08001 * 119.97399 * 0.02562 * 18 17 16 32 32 H 1.07995 * 120.02577 * 179.74128 * 19 18 17 33 33 H 0.96708 * 113.99562 * 90.00047 * 21 20 19 34 34 H 1.07999 * 120.03336 * 180.02562 * 22 20 19 35 35 H 1.07993 * 119.97198 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2815 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9611 -3.6343 -0.2571 12 6 1.2350 -4.8994 -0.3920 13 1 0.3242 -4.7361 -0.9680 14 6 0.8720 -5.4296 0.9966 15 8 2.0669 -5.7537 1.7101 16 6 2.1181 -5.9200 -1.1128 17 6 2.3744 -5.4552 -2.5232 18 6 1.5108 -5.8226 -3.5386 19 6 1.7465 -5.4022 -4.8333 20 6 2.8447 -4.6016 -5.1122 21 8 3.0753 -4.1817 -6.3840 22 6 3.7067 -4.2300 -4.0907 23 6 3.4701 -4.6582 -2.7987 24 1 -0.4850 0.8400 0.0004 25 1 2.9311 -3.6295 -0.2559 26 1 0.3179 -4.6666 1.5434 27 1 0.2560 -6.3230 0.8948 28 1 1.9124 -6.0964 2.6010 29 1 1.6135 -6.8859 -1.1345 30 1 3.0664 -6.0173 -0.5843 31 1 0.6534 -6.4418 -3.3201 32 1 1.0740 -5.6929 -5.6267 33 1 2.6543 -3.3390 -6.6024 34 1 4.5620 -3.6065 -4.3052 35 1 4.1406 -4.3688 -2.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357609492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:07 Heat of formation + Delta-G solvation = -145.873070 kcal Electronic energy + Delta-G solvation = -19991.992261 eV Core-core repulsion = 16760.441435 eV Total energy + Delta-G solvation = -3231.550827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81345 -39.69507 -38.04100 -37.49214 -35.34364 -34.48585 -32.44985 -31.86892 -30.12059 -28.01365 -26.57722 -23.75007 -23.20418 -22.16381 -21.01941 -19.31088 -19.20121 -18.30642 -17.36732 -17.05179 -16.70158 -16.39634 -15.97494 -15.86391 -15.46565 -14.96714 -14.52127 -14.35402 -14.23879 -14.13408 -13.60443 -13.28901 -12.97932 -12.90583 -12.78363 -12.58434 -12.40450 -12.06739 -12.00669 -11.90933 -11.34975 -10.94274 -10.87419 -9.89226 -9.78529 -9.42748 -9.26603 -8.27221 -6.80534 0.31649 0.46023 1.38999 1.39619 1.55130 2.24856 2.50865 2.69542 3.14491 3.37707 3.50971 3.68031 3.88847 3.94855 4.08720 4.17709 4.43092 4.44420 4.49829 4.54118 4.70812 4.82591 4.94268 5.04449 5.12570 5.22201 5.34481 5.40622 5.49371 5.72152 5.93538 5.96080 6.28220 6.38806 6.83274 6.90475 6.95240 7.62197 8.54326 8.72038 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.013719 B = 0.007120 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.545861 B = 3931.885125 C = 5345.525364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.546 3.454 10 O -0.632 6.632 11 N -0.736 5.736 12 C 0.160 3.840 13 H 0.059 0.941 14 C 0.075 3.925 15 O -0.574 6.574 16 C -0.066 4.066 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.154 4.154 20 C 0.085 3.915 21 O -0.510 6.510 22 C -0.155 4.155 23 C -0.100 4.100 24 H 0.273 0.727 25 H 0.389 0.611 26 H 0.013 0.987 27 H 0.075 0.925 28 H 0.390 0.610 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.406 0.594 34 H 0.136 0.864 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -10.450 -5.003 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.099 0.901 9 C 0.349 3.651 10 O -0.520 6.520 11 N -0.389 5.389 12 C 0.054 3.946 13 H 0.077 0.923 14 C -0.005 4.005 15 O -0.381 6.381 16 C -0.103 4.103 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.172 4.172 20 C 0.041 3.959 21 O -0.323 6.323 22 C -0.174 4.174 23 C -0.118 4.118 24 H 0.083 0.917 25 H 0.223 0.777 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.239 0.761 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.264 0.736 34 H 0.154 0.846 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.655 -10.698 -5.602 13.335 hybrid contribution -0.160 1.199 0.574 1.339 sum 5.496 -9.500 -5.028 12.072 Atomic orbital electron populations 1.70185 1.09349 1.28679 1.36875 1.26870 0.95446 1.04648 0.91334 0.85112 0.79022 0.75699 0.79126 1.18867 1.19741 1.17361 1.21397 0.94965 0.90647 1.54105 0.90107 1.18445 0.86682 0.84165 0.75779 1.90539 1.16057 1.87634 1.57745 1.45696 1.08800 1.04962 1.79431 1.20718 0.95651 0.84640 0.93638 0.92331 1.22507 0.86840 0.97950 0.93159 1.86407 1.31670 1.87346 1.32649 1.20699 1.01310 0.97916 0.90417 1.20067 0.95225 0.98084 0.95963 1.21193 0.99276 1.00328 0.91961 1.21581 0.97575 1.00390 0.97693 1.18594 0.94852 0.98272 0.84191 1.84724 1.76888 1.44521 1.26129 1.21583 1.01245 1.01825 0.92710 1.21102 0.97780 0.96637 0.96287 0.91747 0.77728 0.96866 0.90748 0.76076 0.87907 0.89443 0.83991 0.84057 0.73565 0.84642 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.40 11.85 21.83 0.26 -50.14 16 2 C 0.03 1.79 5.49 85.30 0.47 2.26 16 3 Si 0.99 41.42 29.56 68.60 2.03 43.45 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.57 -32.82 9.53 24.83 0.24 -32.58 16 8 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 9 C 0.55 31.39 7.71 86.36 0.67 32.06 16 10 O -0.63 -41.72 14.71 -4.32 -0.06 -41.79 16 11 N -0.74 -32.74 4.47 -446.82 -2.00 -34.74 16 12 C 0.16 5.92 2.36 45.00 0.11 6.02 16 13 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 14 C 0.07 2.48 6.85 71.98 0.49 2.97 16 15 O -0.57 -16.59 12.83 -148.98 -1.91 -18.50 16 16 C -0.07 -1.84 4.60 29.85 0.14 -1.70 16 17 C -0.09 -2.78 4.95 -19.85 -0.10 -2.88 16 18 C -0.11 -3.05 9.69 22.25 0.22 -2.84 16 19 C -0.15 -4.21 9.99 22.37 0.22 -3.99 16 20 C 0.09 2.43 6.70 22.51 0.15 2.58 16 21 O -0.51 -12.66 13.50 -92.53 -1.25 -13.91 16 22 C -0.16 -4.55 9.99 22.37 0.22 -4.33 16 23 C -0.10 -3.03 9.09 22.25 0.20 -2.82 16 24 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 25 H 0.39 15.77 7.80 -92.71 -0.72 15.05 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.39 7.57 9.12 -74.06 -0.68 6.89 16 29 H 0.10 2.30 8.09 -2.39 -0.02 2.28 16 30 H 0.09 2.37 7.67 -2.39 -0.02 2.35 16 31 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.41 6.66 9.06 -74.05 -0.67 5.99 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.13 3.66 7.57 -2.91 -0.02 3.64 16 Total: -1.00 -79.53 308.69 -0.84 -80.36 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -0.93 Total: 40.49 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 3.02 Total: -5.24 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.74 Total: -84.88 kcal Atomic # 8 Polarization: -70.97 SS G_CDS: -3.22 Total: -74.19 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -79.53 -0.84 -80.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357609492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.511 kcal (2) G-P(sol) polarization free energy of solvation -79.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds