Wall clock time and date at job start Sun Mar 29 2020 23:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86796 * 119.99837 * 2 1 4 4 H 1.48505 * 109.46957 * 274.98560 * 3 2 1 5 5 H 1.48500 * 109.47270 * 34.98556 * 3 2 1 6 6 H 1.48495 * 109.47181 * 154.99049 * 3 2 1 7 7 C 1.40044 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99983 * 185.76404 * 7 2 1 9 9 C 1.46379 * 120.00288 * 5.76693 * 7 2 1 10 10 O 1.21689 * 119.99610 * 354.12267 * 9 7 2 11 11 N 1.34765 * 120.00263 * 174.12397 * 9 7 2 12 12 C 1.46501 * 120.00341 * 179.97438 * 11 9 7 13 13 C 1.52990 * 109.47428 * 270.59928 * 12 11 9 14 14 C 1.53787 * 113.61536 * 87.23225 * 13 12 11 15 15 C 1.54051 * 86.98594 * 140.02389 * 14 13 12 16 16 C 1.53781 * 113.61660 * 184.84067 * 13 12 11 17 17 C 1.46504 * 120.00140 * 359.97438 * 11 9 7 18 18 C 1.52997 * 109.47342 * 269.63602 * 17 11 9 19 19 F 1.39901 * 109.47492 * 64.94838 * 18 17 11 20 20 F 1.39895 * 109.47533 * 184.95270 * 18 17 11 21 21 F 1.39906 * 109.46954 * 304.95005 * 18 17 11 22 22 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47497 * 150.59749 * 12 11 9 24 24 H 1.09004 * 109.47131 * 30.60183 * 12 11 9 25 25 H 1.09001 * 112.85304 * 316.03937 * 13 12 11 26 26 H 1.08996 * 113.61530 * 254.61688 * 14 13 12 27 27 H 1.08995 * 113.61146 * 25.52088 * 14 13 12 28 28 H 1.09005 * 113.61848 * 220.02463 * 15 14 13 29 29 H 1.08998 * 113.61786 * 89.11603 * 15 14 13 30 30 H 1.08996 * 113.61603 * 334.48594 * 16 13 12 31 31 H 1.09001 * 113.61330 * 105.30380 * 16 13 12 32 32 H 1.09002 * 109.46796 * 29.63595 * 17 11 9 33 33 H 1.09002 * 109.47284 * 149.63153 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4121 0.5919 7 6 2.0070 -1.2128 0.0005 8 1 3.0829 -1.2152 0.0945 9 6 1.2807 -2.4774 -0.1263 10 8 0.0638 -2.4829 -0.1245 11 7 1.9596 -3.6355 -0.2449 12 6 1.2328 -4.9011 -0.3713 13 6 0.9699 -5.4795 1.0205 14 6 -0.3263 -4.9632 1.6674 15 6 -0.5457 -6.3988 2.1811 16 6 0.3137 -6.8700 0.9959 17 6 3.4247 -3.6288 -0.2476 18 6 3.9315 -3.4905 -1.6845 19 9 3.5538 -2.2436 -2.1943 20 9 5.3263 -3.5973 -1.6995 21 9 3.3777 -4.5041 -2.4739 22 1 -0.4850 0.8400 -0.0004 23 1 1.8286 -5.6061 -0.9510 24 1 0.2833 -4.7259 -0.8772 25 1 1.8390 -5.4184 1.6754 26 1 -0.1583 -4.2350 2.4608 27 1 -1.0754 -4.6386 0.9453 28 1 -1.5833 -6.7285 2.1263 29 1 -0.0908 -6.5891 3.1531 30 1 -0.2608 -7.0658 0.0906 31 1 0.9983 -7.6804 1.2463 32 1 3.7852 -2.7896 0.3472 33 1 3.7931 -4.5616 0.1794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358535920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:24 Heat of formation + Delta-G solvation = -194.248845 kcal Electronic energy + Delta-G solvation = -21443.681407 eV Core-core repulsion = 17668.176109 eV Total energy + Delta-G solvation = -3775.505298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.87894 -48.43155 -48.33576 -40.37333 -38.79731 -35.97631 -34.60549 -30.96912 -29.15757 -27.52915 -26.34568 -24.28999 -23.94856 -21.18266 -20.24923 -19.45676 -19.31464 -18.80536 -17.75212 -17.61804 -16.62569 -16.05595 -15.92853 -15.76703 -15.27311 -15.23172 -14.82980 -14.58182 -14.55342 -14.49199 -14.19583 -13.77274 -13.36047 -13.24763 -13.16481 -13.04490 -12.72624 -12.68118 -12.34246 -12.18008 -11.99602 -11.51707 -11.20479 -10.98873 -10.90237 -9.76372 -9.28390 -8.28213 -6.79323 1.38742 1.40516 1.54241 1.93119 2.21216 2.47464 2.53133 3.05979 3.26537 3.53675 3.68068 3.78892 3.90532 3.95210 4.07373 4.26850 4.47085 4.53198 4.60012 4.81590 4.91086 4.97941 5.07140 5.13801 5.21760 5.36810 5.45119 5.61700 5.70889 6.07534 6.30346 6.91042 7.30920 8.46754 8.67395 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.009385 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.913466 B = 2982.638490 C = 4436.492294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.546 3.454 10 O -0.606 6.606 11 N -0.635 5.635 12 C 0.131 3.869 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.089 3.911 18 C 0.427 3.573 19 F -0.190 7.190 20 F -0.185 7.185 21 F -0.194 7.194 22 H 0.272 0.728 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -10.185 1.731 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.352 3.648 10 O -0.491 6.491 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.140 4.140 14 C -0.170 4.170 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.038 4.038 18 C 0.370 3.630 19 F -0.171 7.171 20 F -0.166 7.166 21 F -0.175 7.175 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.337 -10.102 1.708 12.602 hybrid contribution 0.051 1.170 -0.549 1.294 sum 7.389 -8.932 1.160 11.650 Atomic orbital electron populations 1.70170 1.09238 1.28646 1.36630 1.26787 0.95346 1.04483 0.91481 0.85251 0.79484 0.76328 0.78895 1.19537 1.19855 1.16753 1.21374 0.94903 0.89872 1.53014 0.89325 1.18556 0.86751 0.83463 0.76021 1.90576 1.15655 1.86487 1.56371 1.47893 1.04032 1.07169 1.77905 1.21337 0.96520 0.84673 0.96593 1.22955 0.97485 0.96929 0.96637 1.22799 0.98326 0.96658 0.99256 1.22875 1.00609 0.94537 0.98855 1.22802 0.98767 0.95381 0.98521 1.22616 0.83532 1.08626 0.89010 1.21999 0.74949 0.73258 0.92770 1.93224 1.91110 1.43391 1.89417 1.93139 1.30489 1.95855 1.97137 1.93104 1.85572 1.60899 1.77953 0.91807 0.89419 0.93889 0.88706 0.94988 0.93070 0.91171 0.89050 0.90219 0.88993 0.85922 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.03 11.85 21.84 0.26 -48.77 16 2 C 0.03 1.89 5.50 85.30 0.47 2.35 16 3 Si 0.98 40.79 29.56 68.60 2.03 42.81 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.24 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.56 -29.81 7.58 24.83 0.19 -29.62 16 8 H 0.09 4.25 5.70 -2.91 -0.02 4.23 16 9 C 0.55 29.71 7.39 86.36 0.64 30.35 16 10 O -0.61 -38.31 13.78 -4.31 -0.06 -38.37 16 11 N -0.64 -26.53 2.37 -826.91 -1.96 -28.49 16 12 C 0.13 4.79 4.95 86.38 0.43 5.21 16 13 C -0.12 -3.76 3.95 -10.27 -0.04 -3.80 16 14 C -0.13 -4.87 7.00 31.21 0.22 -4.65 16 15 C -0.13 -3.38 8.09 31.22 0.25 -3.13 16 16 C -0.12 -2.78 7.64 31.12 0.24 -2.54 16 17 C 0.09 2.87 5.27 86.38 0.46 3.33 16 18 C 0.43 14.39 3.30 71.98 0.24 14.62 16 19 F -0.19 -7.91 15.61 44.97 0.70 -7.20 16 20 F -0.18 -5.42 17.32 44.97 0.78 -4.64 16 21 F -0.19 -6.59 16.04 44.97 0.72 -5.87 16 22 H 0.27 14.96 8.29 -92.71 -0.77 14.19 16 23 H 0.09 2.64 7.22 -2.38 -0.02 2.62 16 24 H 0.04 1.87 7.14 -2.39 -0.02 1.85 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 2.23 7.71 -2.39 -0.02 2.21 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.12 3.98 6.01 -2.39 -0.01 3.96 16 33 H 0.14 3.24 8.08 -2.39 -0.02 3.22 16 Total: -1.00 -70.91 287.48 6.69 -64.22 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.13 Total: 14.17 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 3.08 Total: 12.13 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.70 Total: -77.26 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.06 Total: -38.37 kcal Atomic # 9 Polarization: -19.91 SS G_CDS: 2.20 Total: -17.71 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -70.91 6.69 -64.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358535920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.028 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds