Wall clock time and date at job start Sun Mar 29 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48500 * 109.47021 * 269.99471 * 3 2 1 5 5 H 1.48497 * 109.47121 * 29.99876 * 3 2 1 6 6 H 1.48503 * 109.46779 * 149.99498 * 3 2 1 7 7 C 1.37873 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00438 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00105 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47332 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99917 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00083 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99897 * 184.87318 * 13 11 10 15 15 C 1.53004 * 112.85277 * 284.31281 * 14 13 11 16 16 F 1.39896 * 109.46984 * 194.80363 * 15 14 13 17 17 F 1.39897 * 109.46940 * 314.80141 * 15 14 13 18 18 F 1.39892 * 109.46974 * 74.80385 * 15 14 13 19 19 C 1.53787 * 113.61488 * 55.51038 * 14 13 11 20 20 C 1.53784 * 87.08097 * 89.19807 * 19 14 13 21 21 C 1.53775 * 87.17082 * 25.39028 * 20 19 14 22 22 H 0.96998 * 119.99770 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46767 * 60.00225 * 9 7 2 24 24 H 1.08999 * 109.47289 * 300.00741 * 9 7 2 25 25 H 1.08997 * 109.47476 * 60.00329 * 10 9 7 26 26 H 1.09000 * 109.47093 * 299.99829 * 10 9 7 27 27 H 0.96996 * 120.00125 * 4.88078 * 13 11 10 28 28 H 1.09003 * 113.61139 * 334.64900 * 19 14 13 29 29 H 1.08996 * 113.61820 * 203.74567 * 19 14 13 30 30 H 1.08997 * 113.61257 * 139.98585 * 20 19 14 31 31 H 1.08999 * 113.61381 * 270.80294 * 20 19 14 32 32 H 1.09002 * 113.61493 * 89.16123 * 21 20 19 33 33 H 1.09003 * 113.61586 * 220.05725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0022 12 8 6.1350 -1.5862 0.0026 13 7 6.2024 -3.8038 0.0028 14 6 7.6633 -3.8061 0.1118 15 6 8.3569 -3.4008 -1.1904 16 9 9.7114 -3.7445 -1.1238 17 9 7.7588 -4.0682 -2.2646 18 9 8.2348 -2.0193 -1.3733 19 6 8.1900 -3.0591 1.3486 20 6 8.0804 -4.3940 2.1042 21 6 8.2327 -5.0903 0.7416 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8753 -0.6804 -0.8888 25 1 3.6586 -3.1502 -0.8892 26 1 3.6579 -3.1506 0.8907 27 1 5.7201 -4.6423 -0.0690 28 1 7.5097 -2.2914 1.7175 29 1 9.2140 -2.7019 1.2398 30 1 8.9111 -4.5799 2.7849 31 1 7.1078 -4.5536 2.5697 32 1 9.2684 -5.2895 0.4664 33 1 7.5870 -5.9602 0.6211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361856715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:22 Heat of formation + Delta-G solvation = -176.502759 kcal Electronic energy + Delta-G solvation = -21052.293393 eV Core-core repulsion = 17277.557623 eV Total energy + Delta-G solvation = -3774.735770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.02761 -47.61680 -47.39074 -40.41932 -38.04836 -33.53682 -33.25579 -31.25830 -28.22881 -26.23137 -26.07778 -23.32749 -21.70980 -19.89815 -19.69412 -18.40158 -18.24152 -18.04925 -17.29362 -16.08693 -15.85265 -15.18814 -14.76559 -14.42148 -14.32196 -14.11329 -13.95264 -13.64826 -13.61899 -13.53513 -13.05347 -12.76412 -12.63039 -12.60034 -12.31738 -11.47842 -11.30320 -11.18421 -10.99002 -10.84100 -10.21211 -10.08892 -9.80961 -9.33619 -9.24132 -9.20476 -8.52741 -6.05060 -4.04214 2.56568 2.91155 3.07493 3.37086 3.43753 3.53938 3.56664 3.80999 3.94968 4.37026 4.44471 4.49198 4.63157 4.78077 5.26818 5.28750 5.30504 5.35812 5.51609 5.60273 5.83371 5.86782 5.99756 6.02100 6.34385 6.61242 7.32139 7.38773 7.50590 7.75634 8.40730 8.51488 8.97478 9.57821 11.07705 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.005138 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.593102 B = 5448.371670 C = 5646.730905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.119 4.119 11 C 0.508 3.492 12 O -0.514 6.514 13 N -0.715 5.715 14 C 0.102 3.898 15 C 0.445 3.555 16 F -0.186 7.186 17 F -0.184 7.184 18 F -0.164 7.164 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.130 4.130 22 H 0.264 0.736 23 H 0.024 0.976 24 H 0.020 0.980 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.409 0.591 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.533 -12.483 2.117 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.387 6.387 13 N -0.371 5.371 14 C 0.011 3.989 15 C 0.389 3.611 16 F -0.167 7.167 17 F -0.166 7.166 18 F -0.145 7.145 19 C -0.167 4.167 20 C -0.169 4.169 21 C -0.168 4.168 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.246 0.754 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.792 -11.551 2.107 22.159 hybrid contribution 0.221 0.526 -0.523 0.774 sum 19.013 -11.025 1.585 22.035 Atomic orbital electron populations 1.69910 1.06301 1.27010 1.50945 1.24962 0.94699 0.99218 0.94271 0.86805 0.80596 0.83407 0.78801 1.20224 1.21422 1.18522 1.21087 0.89183 0.94589 1.51520 0.90908 1.19382 0.96510 0.89959 0.97773 1.21683 0.86977 1.03593 1.03597 1.21811 0.91834 0.82529 0.74104 1.90721 1.70379 1.31006 1.46607 1.45847 1.02985 1.10612 1.77638 1.22496 0.84259 1.01832 0.90315 1.20993 0.76863 0.75958 0.87278 1.93122 1.34897 1.92168 1.96530 1.93158 1.83458 1.80633 1.59342 1.93284 1.95482 1.29865 1.95847 1.23209 1.02677 0.98320 0.92476 1.22792 1.03294 0.95107 0.95714 1.23324 1.02678 0.94698 0.96079 0.92681 0.95737 0.96185 0.89393 0.89270 0.75434 0.88439 0.88531 0.90133 0.89176 0.87530 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.53 -14.85 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.19 5.64 -27.89 -0.16 -2.35 16 11 C 0.51 8.73 7.34 -10.99 -0.08 8.65 16 12 O -0.51 -10.70 12.70 5.55 0.07 -10.63 16 13 N -0.72 -8.96 4.88 -46.77 -0.23 -9.19 16 14 C 0.10 1.19 0.73 -130.91 -0.10 1.09 16 15 C 0.45 6.13 2.80 37.16 0.10 6.23 16 16 F -0.19 -2.25 15.80 2.25 0.04 -2.22 16 17 F -0.18 -2.63 17.08 2.25 0.04 -2.59 16 18 F -0.16 -2.81 15.22 2.25 0.03 -2.78 16 19 C -0.13 -1.45 6.62 -25.91 -0.17 -1.62 16 20 C -0.13 -1.05 7.99 -25.92 -0.21 -1.26 16 21 C -0.13 -1.01 7.28 -25.83 -0.19 -1.20 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 24 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 25 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.41 3.84 8.76 -40.82 -0.36 3.48 16 28 H 0.10 1.36 6.69 -51.93 -0.35 1.02 16 29 H 0.10 1.00 8.01 -51.93 -0.42 0.58 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.11 0.74 7.05 -51.93 -0.37 0.37 16 33 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -33.42 286.91 -4.89 -38.31 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.95 Total: -2.25 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.32 Total: -3.74 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.55 Total: -36.27 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 0.11 Total: -7.59 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.42 -4.89 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361856715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.192 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds