Wall clock time and date at job start Mon Mar 30 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47417 * 120.00501 * 180.02562 * 14 13 3 17 17 C 1.36593 * 125.65786 * 179.97438 * 16 14 13 18 18 C 1.39956 * 107.03317 * 179.97438 * 17 16 14 19 19 C 1.37982 * 106.72481 * 0.02562 * 18 17 16 20 20 C 1.46404 * 125.93263 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99430 * 180.02562 * 20 19 18 22 22 O 1.21340 * 120.00513 * 0.02562 * 20 19 18 23 23 O 1.34450 * 125.65667 * 359.69436 * 16 14 13 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 31 31 H 1.08001 * 126.48129 * 359.96505 * 17 16 14 32 32 H 1.07993 * 126.63662 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47299 * 90.00636 * 21 20 19 34 34 H 1.09009 * 109.46856 * 210.00140 * 21 20 19 35 35 H 1.08997 * 109.47631 * 330.00083 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0453 3.3240 2.6263 17 6 -1.1532 3.9331 2.8684 18 6 -1.1063 4.4242 4.1781 19 6 0.1334 4.0898 4.6834 20 6 0.6269 4.4028 6.0258 21 6 2.0105 3.9716 6.4393 22 8 -0.0779 5.0093 6.8053 23 8 0.8084 3.4213 3.7290 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 -1.9803 4.0194 2.1794 32 1 -1.8889 4.9609 4.6935 33 1 2.7250 4.7566 6.1919 34 1 2.0283 3.7897 7.5140 35 1 2.2789 3.0565 5.9115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446427518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:12 Heat of formation + Delta-G solvation = -66.530960 kcal Electronic energy + Delta-G solvation = -19765.021595 eV Core-core repulsion = 16536.911300 eV Total energy + Delta-G solvation = -3228.110295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.73576 -39.40227 -38.94117 -35.30964 -33.24692 -32.51736 -31.51347 -30.92977 -29.25615 -27.11793 -24.40843 -23.01496 -21.92661 -20.81844 -20.04655 -19.54417 -18.36133 -16.95796 -16.62232 -16.01253 -15.52657 -15.16804 -14.98822 -14.49991 -14.36716 -13.74153 -13.49801 -13.15191 -13.10577 -12.72598 -12.50156 -12.44163 -12.18180 -11.63684 -11.32838 -11.08876 -10.89585 -10.45454 -10.35919 -10.29114 -10.16833 -9.77701 -9.54153 -9.17247 -8.79960 -8.59319 -8.03547 -6.20070 -4.30216 0.40287 1.77478 2.43505 2.61700 3.21646 3.27394 3.28076 3.56988 3.64745 3.93695 4.29686 4.72668 4.77546 5.08187 5.12234 5.17080 5.21711 5.39181 5.57472 5.65516 5.83604 6.14594 6.30349 6.35734 6.54443 6.57941 6.93762 7.06951 7.13299 7.16713 7.26339 7.50527 7.61328 7.77571 8.06170 8.41879 8.60193 8.84137 9.36705 10.85300 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.004934 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.478283 B = 5673.205625 C = 6565.692757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.579 3.421 15 O -0.517 6.517 16 C -0.008 4.008 17 C -0.160 4.160 18 C -0.125 4.125 19 C -0.103 4.103 20 C 0.442 3.558 21 C -0.197 4.197 22 O -0.446 6.446 23 O -0.141 6.141 24 H 0.026 0.974 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.103 0.897 29 H 0.266 0.734 30 H 0.395 0.605 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 4.726 12.547 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.334 5.334 14 C 0.361 3.639 15 O -0.396 6.396 16 C -0.063 4.063 17 C -0.180 4.180 18 C -0.145 4.145 19 C -0.154 4.154 20 C 0.320 3.680 21 C -0.254 4.254 22 O -0.321 6.321 23 O -0.036 6.036 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.228 0.772 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.123 4.764 12.095 13.638 hybrid contribution 1.097 0.003 0.138 1.106 sum -3.026 4.767 12.233 13.473 Atomic orbital electron populations 1.21866 0.98297 0.98424 1.01152 1.21960 0.92645 0.99467 1.02667 1.18963 0.94693 0.89374 0.80258 0.92805 1.21149 0.90338 1.39566 1.06571 0.91953 1.24871 0.98763 0.94610 0.95258 1.69874 1.35359 1.37280 1.09296 0.86480 0.84579 0.78379 0.77524 1.20100 1.21069 1.20129 1.46562 1.13659 1.54008 1.19168 1.16791 0.83828 0.79595 0.83642 1.90855 1.51788 1.60112 1.36852 1.23353 0.91882 1.03471 0.87609 1.21932 0.98357 1.00785 0.96919 1.22416 0.96719 1.00570 0.94762 1.23180 0.94093 1.05307 0.92841 1.21216 0.89180 0.75374 0.82198 1.22230 0.94430 1.04512 1.04211 1.90625 1.58661 1.32093 1.50747 1.84079 1.41438 1.58073 1.20006 0.95491 0.92964 0.94480 0.94758 0.87924 0.92361 0.77187 0.81516 0.81852 0.87841 0.88922 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.78 11.29 55.43 0.63 -23.15 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 13 N -0.69 -13.80 5.02 -56.02 -0.28 -14.08 16 14 C 0.58 11.23 6.38 -12.52 -0.08 11.15 16 15 O -0.52 -11.42 13.99 5.28 0.07 -11.35 16 16 C -0.01 -0.12 7.13 -36.44 -0.26 -0.38 16 17 C -0.16 -2.24 10.58 -39.53 -0.42 -2.66 16 18 C -0.13 -1.57 10.67 -39.03 -0.42 -1.98 16 19 C -0.10 -1.32 7.07 -36.39 -0.26 -1.58 16 20 C 0.44 4.99 7.23 -31.02 -0.22 4.77 16 21 C -0.20 -1.56 10.17 36.01 0.37 -1.19 16 22 O -0.45 -6.02 17.62 5.51 0.10 -5.92 16 23 O -0.14 -2.01 10.14 4.30 0.04 -1.96 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 26 H 0.04 0.77 5.64 -51.93 -0.29 0.47 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 7.03 8.29 -40.82 -0.34 6.69 16 31 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.09 0.71 7.96 -51.93 -0.41 0.29 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -28.82 306.37 -5.75 -34.57 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.23 Total: 6.01 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.67 Total: -3.64 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.34 Total: -37.23 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.21 Total: -19.23 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.82 -5.75 -34.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446427518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.962 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds