Wall clock time and date at job start Mon Mar 30 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47417 * 120.00501 * 180.02562 * 14 13 3 17 17 C 1.36593 * 125.65786 * 179.97438 * 16 14 13 18 18 C 1.39956 * 107.03317 * 179.97438 * 17 16 14 19 19 C 1.37982 * 106.72481 * 0.02562 * 18 17 16 20 20 C 1.46404 * 125.93263 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99430 * 180.02562 * 20 19 18 22 22 O 1.21340 * 120.00513 * 0.02562 * 20 19 18 23 23 O 1.34450 * 125.65667 * 359.69436 * 16 14 13 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 31 31 H 1.08001 * 126.48129 * 359.96505 * 17 16 14 32 32 H 1.07993 * 126.63662 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47299 * 90.00636 * 21 20 19 34 34 H 1.09009 * 109.46856 * 210.00140 * 21 20 19 35 35 H 1.08997 * 109.47631 * 330.00083 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0453 3.3240 2.6263 17 6 -1.1532 3.9331 2.8684 18 6 -1.1063 4.4242 4.1781 19 6 0.1334 4.0898 4.6834 20 6 0.6269 4.4028 6.0258 21 6 2.0105 3.9716 6.4393 22 8 -0.0779 5.0093 6.8053 23 8 0.8084 3.4213 3.7290 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 -1.9803 4.0194 2.1794 32 1 -1.8889 4.9609 4.6935 33 1 2.7250 4.7566 6.1919 34 1 2.0283 3.7897 7.5140 35 1 2.2789 3.0565 5.9115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446427518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:12 Heat of formation + Delta-G solvation = -84.821508 kcal Electronic energy + Delta-G solvation = -19765.814732 eV Core-core repulsion = 16536.911300 eV Total energy + Delta-G solvation = -3228.903432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.85149 -40.71361 -40.20522 -37.09020 -34.54713 -34.15085 -33.04811 -32.12148 -30.31473 -28.91642 -25.79784 -24.68375 -23.08083 -22.22203 -21.41479 -21.00557 -19.82381 -18.25693 -17.76697 -17.59307 -17.27066 -16.30735 -16.26834 -16.00788 -15.63307 -15.25167 -14.67003 -14.49617 -14.35927 -14.19368 -13.88547 -13.51605 -13.17099 -13.15339 -13.10501 -12.93907 -12.65287 -12.21274 -12.09599 -11.62452 -11.37031 -11.24348 -11.13314 -11.08286 -10.53856 -10.03156 -9.70732 -8.16261 -6.33607 -0.67982 0.64733 1.27566 1.47698 1.48641 1.56513 1.64411 2.10733 2.25838 2.48660 2.91958 3.13853 3.66725 3.74728 4.03327 4.34904 4.39422 4.49087 4.53282 4.55979 4.61862 4.71447 4.75662 5.04086 5.09178 5.13797 5.24079 5.38959 5.42349 5.49546 5.58497 5.76714 5.86874 6.13525 6.22354 6.69799 6.76653 7.18835 7.39697 8.88930 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.004934 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.478283 B = 5673.205625 C = 6565.692757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.276 3.724 4 H 0.009 0.991 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.687 5.687 14 C 0.582 3.418 15 O -0.552 6.552 16 C -0.038 4.038 17 C -0.143 4.143 18 C -0.128 4.128 19 C -0.095 4.095 20 C 0.447 3.553 21 C -0.193 4.193 22 O -0.466 6.466 23 O -0.140 6.140 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.266 0.734 30 H 0.407 0.593 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 5.192 14.738 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.335 5.335 14 C 0.367 3.633 15 O -0.433 6.433 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.147 4.147 20 C 0.327 3.673 21 C -0.249 4.249 22 O -0.343 6.343 23 O -0.035 6.035 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.194 0.806 32 H 0.205 0.795 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.371 5.237 14.320 15.616 hybrid contribution 0.800 -0.068 -0.450 0.920 sum -2.571 5.170 13.870 15.024 Atomic orbital electron populations 1.21716 0.96888 0.99535 1.00322 1.21811 0.93838 0.98784 1.01688 1.18563 0.94109 0.89436 0.80563 0.97332 1.21496 0.91108 1.39398 1.06928 0.90993 1.25711 1.03193 0.94230 0.94928 1.70022 1.37137 1.38067 1.09786 0.85440 0.79171 0.78423 0.77568 1.18949 1.21215 1.19736 1.46288 1.14510 1.54348 1.18306 1.17032 0.82923 0.78796 0.84504 1.90830 1.52558 1.61281 1.38594 1.22600 0.93098 1.06167 0.87403 1.22158 0.97606 0.98987 0.97621 1.22710 0.97350 1.00593 0.94060 1.23760 0.94100 1.03711 0.93139 1.21675 0.90197 0.74470 0.80982 1.22290 0.92187 1.05139 1.05294 1.90631 1.59567 1.33161 1.50951 1.84047 1.41302 1.58409 1.19698 0.93286 0.95001 0.94041 0.93903 0.90503 0.92475 0.75805 0.80644 0.79509 0.86098 0.87305 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.63 16 3 C 0.28 13.62 2.24 44.25 0.10 13.71 16 4 H 0.01 0.51 7.58 -2.39 -0.02 0.49 16 5 C -0.55 -28.11 8.73 25.60 0.22 -27.89 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -50.38 11.29 21.45 0.24 -50.14 16 9 Si 0.97 40.68 29.54 68.60 2.03 42.70 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 N -0.69 -27.83 5.02 -449.40 -2.25 -30.09 16 14 C 0.58 22.83 6.38 86.66 0.55 23.38 16 15 O -0.55 -25.03 13.99 -4.01 -0.06 -25.09 16 16 C -0.04 -1.18 7.13 24.30 0.17 -1.01 16 17 C -0.14 -3.82 10.58 22.30 0.24 -3.58 16 18 C -0.13 -2.90 10.67 22.63 0.24 -2.66 16 19 C -0.10 -2.22 7.07 24.34 0.17 -2.05 16 20 C 0.45 8.89 7.23 27.81 0.20 9.09 16 21 C -0.19 -2.42 10.17 71.24 0.72 -1.70 16 22 O -0.47 -11.43 17.62 -3.22 -0.06 -11.48 16 23 O -0.14 -3.73 10.14 -7.51 -0.08 -3.81 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 26 H 0.04 1.73 5.64 -2.38 -0.01 1.71 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 29 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.41 14.31 8.29 -92.71 -0.77 13.55 16 31 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 1.18 7.96 -2.39 -0.02 1.16 16 Total: -1.00 -62.78 306.37 4.03 -58.75 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.35 Total: 20.88 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 3.85 Total: -1.73 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.01 Total: -80.23 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.19 Total: -40.38 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -62.78 4.03 -58.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446427518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.068 kcal (2) G-P(sol) polarization free energy of solvation -62.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds