Wall clock time and date at job start Mon Mar 30 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35128 * 125.61429 * 2 1 4 4 C 1.40366 * 107.11626 * 179.77856 * 3 2 1 5 5 C 1.36547 * 106.70284 * 0.41131 * 4 3 2 6 6 C 1.46655 * 125.98626 * 179.85523 * 5 4 3 7 7 O 1.21694 * 119.99926 * 359.70761 * 6 5 4 8 8 N 1.34781 * 120.00392 * 179.71243 * 6 5 4 9 9 C 1.47026 * 125.64203 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.26791 * 181.03648 * 9 8 6 11 11 C 1.55448 * 102.96961 * 22.19024 * 10 9 8 12 12 O 1.42902 * 111.01110 * 82.52556 * 11 10 9 13 13 C 1.50700 * 111.11612 * 206.45980 * 11 10 9 14 14 H 1.07997 * 120.00337 * 353.56506 * 13 11 10 15 15 C 1.37878 * 119.99814 * 173.55627 * 13 11 10 16 16 N 1.31518 * 119.99796 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00249 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47451 * 59.99940 * 17 15 13 19 19 H 1.48499 * 109.47599 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47090 * 300.00111 * 17 15 13 21 21 C 1.47419 * 125.65221 * 179.97438 * 8 6 5 22 22 O 1.33930 * 125.61577 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47359 * 299.98449 * 1 2 3 25 25 H 1.09008 * 109.46929 * 59.98606 * 1 2 3 26 26 H 1.08007 * 126.44728 * 0.03457 * 3 2 1 27 27 H 1.07994 * 126.65142 * 180.29435 * 4 3 2 28 28 H 1.08998 * 109.88266 * 300.45023 * 9 8 6 29 29 H 1.09000 * 109.88221 * 61.61840 * 9 8 6 30 30 H 1.08998 * 110.71927 * 140.55469 * 10 9 8 31 31 H 1.08998 * 110.72073 * 263.64892 * 10 9 8 32 32 H 0.96699 * 114.00301 * 186.50332 * 12 11 10 33 33 H 0.97004 * 120.00000 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.36926 * 274.73432 * 21 8 6 35 35 H 1.08995 * 110.36556 * 36.94716 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6532 0.0052 5 6 3.5823 -0.7116 -0.0013 6 6 4.7414 -1.6100 -0.0021 7 8 5.8680 -1.1498 -0.0021 8 7 4.5591 -2.9455 -0.0029 9 6 3.2593 -3.6327 -0.0037 10 6 3.5430 -5.1494 0.0221 11 6 4.9808 -5.2254 0.6080 12 8 4.9573 -5.1505 2.0349 13 6 5.6899 -6.4725 0.1465 14 1 5.1546 -7.2194 -0.4210 15 6 7.0221 -6.6598 0.4485 16 7 7.6738 -5.7504 1.1397 17 14 7.9013 -8.2052 -0.1242 18 1 7.8555 -8.2803 -1.6066 19 1 9.3157 -8.1660 0.3265 20 1 7.2314 -9.3984 0.4527 21 6 5.6297 -3.9589 -0.0043 22 8 2.2870 -1.0888 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5136 0.8901 25 1 -0.3633 0.5141 -0.8899 26 1 1.9613 2.1261 0.0005 27 1 4.5113 1.2703 0.0110 28 1 2.6885 -3.3472 0.8800 29 1 2.7041 -3.3746 -0.9055 30 1 2.8344 -5.6632 0.6717 31 1 3.5119 -5.5647 -0.9851 32 1 5.8333 -5.0939 2.4403 33 1 8.6112 -5.8820 1.3519 34 1 5.9625 -4.1577 -1.0231 35 1 6.4669 -3.6270 0.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:35 Heat of formation + Delta-G solvation = -91.192654 kcal Electronic energy + Delta-G solvation = -20371.565367 eV Core-core repulsion = 17142.385661 eV Total energy + Delta-G solvation = -3229.179706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.71108 -40.90912 -38.98084 -36.17888 -34.26344 -34.24989 -32.97944 -31.88876 -29.80021 -28.43780 -26.73611 -24.55159 -22.89049 -22.16271 -21.54477 -20.83743 -19.17031 -18.66409 -17.62080 -17.25403 -16.96249 -16.48464 -16.35813 -15.92464 -15.01184 -14.85671 -14.71964 -14.30164 -14.03601 -13.96380 -13.72030 -13.68627 -13.53023 -13.31912 -12.83441 -12.76527 -12.56649 -12.37793 -12.29112 -12.14545 -11.46457 -11.22862 -11.04545 -10.67879 -10.37111 -9.76959 -9.37007 -8.26052 -6.43969 -0.00560 1.34937 1.44108 1.44441 1.53022 1.56617 2.06491 2.10099 2.38857 2.99721 3.46116 3.72874 3.85383 3.94517 4.03967 4.15613 4.28473 4.52202 4.54157 4.63961 4.68051 4.75427 4.78350 4.93685 4.97603 5.02308 5.14539 5.20088 5.32644 5.41001 5.49945 5.72564 5.92316 6.04009 6.44390 6.64558 6.90631 7.23852 7.32754 8.79452 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.038462 B = 0.005024 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.818874 B = 5571.950061 C = 6003.781377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.227 4.227 4 C -0.120 4.120 5 C -0.106 4.106 6 C 0.596 3.404 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.114 3.886 10 C -0.111 4.111 11 C 0.234 3.766 12 O -0.588 6.588 13 C -0.558 4.558 14 H 0.072 0.928 15 C 0.027 3.973 16 N -0.917 5.917 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.107 3.893 22 O -0.166 6.166 23 H 0.083 0.917 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.190 0.810 27 H 0.159 0.841 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.374 0.626 33 H 0.270 0.730 34 H 0.050 0.950 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 9.859 -3.188 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.032 4.032 3 C -0.245 4.245 4 C -0.141 4.141 5 C -0.157 4.157 6 C 0.386 3.614 7 O -0.461 6.461 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.149 4.149 11 C 0.194 3.806 12 O -0.396 6.396 13 C -0.596 4.596 14 H 0.090 0.910 15 C -0.174 4.174 16 N -0.555 5.555 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.015 4.015 22 O -0.063 6.063 23 H 0.102 0.898 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.207 0.793 27 H 0.177 0.823 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.222 0.778 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.208 9.837 -3.218 18.395 hybrid contribution 1.985 -0.553 -0.001 2.060 sum -13.223 9.284 -3.219 16.474 Atomic orbital electron populations 1.20682 0.81001 1.05523 1.05994 1.23886 0.96189 0.83541 0.99560 1.21899 0.90558 1.01460 1.10608 1.22194 1.00305 0.92102 0.99479 1.21603 0.81952 0.94520 1.17628 1.16723 0.86699 0.80753 0.77181 1.90796 1.24193 1.76260 1.54820 1.48739 1.10595 1.04602 1.69655 1.22120 0.83766 0.92726 1.02131 1.22700 0.96500 0.93696 1.01977 1.19912 0.91986 0.90203 0.78528 1.86101 1.34624 1.96868 1.21957 1.21748 0.95961 1.05465 1.36420 0.91017 1.25852 0.98046 0.99513 0.94018 1.69839 1.11029 1.35575 1.39104 0.85469 0.77073 0.79398 0.78867 1.19378 1.21146 1.19380 1.22955 0.90037 0.88665 0.99869 1.84108 1.15349 1.35969 1.70853 0.89795 0.87059 0.86829 0.79279 0.82311 0.91238 0.89671 0.89343 0.88850 0.77759 0.92075 0.93188 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.41 71.24 0.74 -0.03 16 2 C 0.02 0.44 7.31 24.97 0.18 0.62 16 3 C -0.23 -4.81 10.77 22.07 0.24 -4.57 16 4 C -0.12 -3.56 10.62 22.39 0.24 -3.32 16 5 C -0.11 -3.77 6.95 24.07 0.17 -3.60 16 6 C 0.60 26.71 7.82 86.44 0.68 27.38 16 7 O -0.58 -29.70 17.12 -4.33 -0.07 -29.77 16 8 N -0.61 -27.06 3.33 -816.50 -2.72 -29.78 16 9 C 0.11 4.21 5.55 86.73 0.48 4.69 16 10 C -0.11 -4.37 6.14 31.88 0.20 -4.17 16 11 C 0.23 11.59 0.88 -10.04 -0.01 11.58 16 12 O -0.59 -30.92 13.17 -148.98 -1.96 -32.88 16 13 C -0.56 -29.23 8.28 25.60 0.21 -29.01 16 14 H 0.07 3.60 7.79 -2.91 -0.02 3.57 16 15 C 0.03 1.41 5.29 84.65 0.45 1.86 16 16 N -0.92 -50.54 10.69 21.45 0.23 -50.31 16 17 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C 0.11 5.46 5.38 86.86 0.47 5.93 16 22 O -0.17 -4.95 8.28 -5.04 -0.04 -4.99 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.07 2.47 7.68 -2.39 -0.02 2.45 16 29 H 0.09 2.67 7.79 -2.39 -0.02 2.65 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 31 H 0.09 3.37 8.04 -2.39 -0.02 3.35 16 32 H 0.37 20.49 7.57 -74.06 -0.56 19.93 16 33 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 34 H 0.05 2.62 8.03 -2.39 -0.02 2.60 16 35 H 0.05 3.00 7.32 -2.39 -0.02 2.98 16 Total: -1.00 -67.96 300.05 2.05 -65.91 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.55 Total: 30.61 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.04 Total: 7.35 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.49 Total: -80.08 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -2.08 Total: -67.65 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.96 2.05 -65.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.280 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds