Wall clock time and date at job start Mon Mar 30 2020 00:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86811 * 119.99723 * 2 1 4 4 H 1.48505 * 109.46708 * 274.99888 * 3 2 1 5 5 H 1.48493 * 109.46952 * 34.99569 * 3 2 1 6 6 H 1.48496 * 109.47256 * 155.00139 * 3 2 1 7 7 C 1.37876 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00155 * 184.92051 * 7 2 1 9 9 C 1.50697 * 119.99341 * 4.92746 * 7 2 1 10 10 O 1.42897 * 110.88880 * 298.62216 * 9 7 2 11 11 C 1.55405 * 111.07414 * 62.41212 * 9 7 2 12 12 C 1.54321 * 102.83228 * 153.48405 * 11 9 7 13 13 N 1.47024 * 107.39958 * 337.97496 * 12 11 9 14 14 C 1.34776 * 125.64726 * 178.82085 * 13 12 11 15 15 O 1.21289 * 120.00032 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00128 * 0.03634 * 14 13 12 17 17 C 1.50706 * 109.47230 * 179.97438 * 16 14 13 18 18 C 1.34512 * 125.79048 * 89.99331 * 17 16 14 19 19 C 1.41388 * 106.83822 * 179.97438 * 18 17 16 20 20 C 1.34507 * 106.84206 * 0.02562 * 19 18 17 21 21 O 1.34297 * 125.78525 * 269.68897 * 17 16 14 22 22 C 1.47422 * 108.70742 * 358.86624 * 13 12 11 23 23 H 0.96993 * 120.00033 * 0.02562 * 1 2 3 24 24 H 0.96698 * 113.99652 * 56.12651 * 10 9 7 25 25 H 1.08997 * 110.69445 * 35.19457 * 11 9 7 26 26 H 1.09004 * 110.85063 * 271.84633 * 11 9 7 27 27 H 1.08996 * 109.88417 * 218.48138 * 12 11 9 28 28 H 1.09002 * 109.88252 * 97.46921 * 12 11 9 29 29 H 1.09007 * 109.46700 * 299.98805 * 16 14 13 30 30 H 1.08995 * 109.47441 * 59.99220 * 16 14 13 31 31 H 1.07995 * 126.58186 * 359.96861 * 18 17 16 32 32 H 1.08000 * 126.57517 * 179.97438 * 19 18 17 33 33 H 1.07998 * 125.79327 * 180.02562 * 20 19 18 34 34 H 1.08993 * 110.37362 * 142.96317 * 22 13 12 35 35 H 1.09005 * 110.36310 * 265.29137 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4122 0.5916 7 6 2.0047 -1.1940 0.0005 8 1 3.0816 -1.1956 0.0808 9 6 1.2553 -2.4967 -0.1110 10 8 0.3620 -2.6666 0.9913 11 6 0.4926 -2.5887 -1.4618 12 6 0.3993 -4.1106 -1.6998 13 7 1.4672 -4.7448 -0.9131 14 6 1.7052 -6.0692 -0.8358 15 8 2.6178 -6.4825 -0.1522 16 6 0.8374 -7.0365 -1.5990 17 6 1.3105 -8.4445 -1.3444 18 6 0.8845 -9.2508 -0.3556 19 6 1.5871 -10.4704 -0.4902 20 6 2.4008 -10.3361 -1.5528 21 8 2.2248 -9.1090 -2.0697 22 6 2.2340 -3.6924 -0.2218 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2697 -1.9427 1.1007 25 1 1.0604 -2.1079 -2.2583 26 1 -0.5017 -2.1501 -1.3767 27 1 0.5389 -4.3295 -2.7584 28 1 -0.5723 -4.4785 -1.3703 29 1 -0.1966 -6.9351 -1.2691 30 1 0.9017 -6.8191 -2.6651 31 1 0.1474 -9.0124 0.3968 32 1 1.4898 -11.3421 0.1399 33 1 3.0770 -11.0891 -1.9297 34 1 2.5336 -4.0306 0.7700 35 1 3.1091 -3.4132 -0.8087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:53 Heat of formation + Delta-G solvation = -88.999021 kcal Electronic energy + Delta-G solvation = -19994.680963 eV Core-core repulsion = 16765.596380 eV Total energy + Delta-G solvation = -3229.084583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.47464 -40.99539 -38.94697 -36.08716 -34.17816 -34.12312 -33.15950 -31.42743 -30.05460 -28.27330 -26.62460 -23.95194 -22.67249 -21.90533 -21.38441 -20.28789 -19.14393 -18.29409 -18.23874 -16.99139 -16.85074 -16.83047 -16.43984 -15.82072 -15.50748 -15.12782 -14.73342 -14.29364 -13.80923 -13.73254 -13.64185 -13.52809 -13.45825 -13.23125 -13.07072 -12.69081 -12.60397 -12.45128 -12.27590 -11.84977 -11.29675 -11.05918 -10.81557 -10.61524 -10.14651 -9.59077 -9.38360 -8.25411 -6.39745 0.75573 1.42077 1.45906 1.54408 1.57303 1.67461 1.99942 2.26542 2.41329 3.00140 3.53849 3.71618 3.86184 4.03791 4.13416 4.15358 4.34325 4.36658 4.40516 4.45911 4.60159 4.72252 4.89011 4.93582 5.02247 5.19181 5.20362 5.27836 5.47365 5.54455 5.62884 5.77537 6.06873 6.21218 6.58468 6.64952 7.10144 7.31176 7.44963 8.80814 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.052874 B = 0.004048 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.431054 B = 6916.177251 C = 7007.861750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.233 3.767 10 O -0.595 6.595 11 C -0.129 4.129 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.518 3.482 15 O -0.592 6.592 16 C -0.046 4.046 17 C -0.016 4.016 18 C -0.213 4.213 19 C -0.228 4.228 20 C -0.042 4.042 21 O -0.193 6.193 22 C 0.124 3.876 23 H 0.273 0.727 24 H 0.381 0.619 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.240 0.760 34 H 0.042 0.958 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 -13.595 -6.935 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.604 4.604 8 H 0.071 0.929 9 C 0.193 3.807 10 O -0.405 6.405 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.341 5.341 14 C 0.308 3.692 15 O -0.473 6.473 16 C -0.085 4.085 17 C -0.066 4.066 18 C -0.232 4.232 19 C -0.247 4.247 20 C -0.109 4.109 21 O -0.089 6.089 22 C 0.002 3.998 23 H 0.082 0.918 24 H 0.231 0.769 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.188 0.812 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.611 -14.202 -6.769 15.815 hybrid contribution 0.195 1.549 0.506 1.641 sum -1.416 -12.653 -6.263 14.189 Atomic orbital electron populations 1.69684 1.06612 1.28493 1.49687 1.25576 0.95804 1.01912 0.92939 0.85532 0.78535 0.79137 0.78324 1.19632 1.20624 1.20244 1.21694 0.93900 0.91800 1.52959 0.92854 1.19842 0.86450 0.90367 0.84007 1.86096 1.51245 1.50339 1.52784 1.23002 1.01825 0.93051 0.98901 1.22306 0.90131 0.93662 0.95846 1.48650 1.33031 1.04883 1.47508 1.20792 0.84915 0.81653 0.81808 1.90675 1.34625 1.78040 1.43980 1.20129 1.00360 0.84256 1.03717 1.21839 0.94315 0.95015 0.95415 1.21877 1.05466 0.95162 1.00701 1.22166 1.00821 1.00212 1.01472 1.24808 1.03206 0.85699 0.97176 1.83968 1.49488 1.25685 1.49789 1.22138 0.94769 0.87239 0.95698 0.91793 0.76895 0.91757 0.90654 0.88642 0.90047 0.83261 0.84527 0.82906 0.81183 0.74428 0.93900 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.33 10.77 21.45 0.23 -45.10 16 2 C 0.04 1.97 5.26 84.65 0.45 2.42 16 3 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.57 -29.42 8.27 25.60 0.21 -29.21 16 8 H 0.05 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.23 11.17 0.89 -10.06 -0.01 11.16 16 10 O -0.60 -30.36 13.19 -148.98 -1.96 -32.32 16 11 C -0.13 -5.21 5.52 31.87 0.18 -5.03 16 12 C 0.10 3.22 6.48 86.73 0.56 3.78 16 13 N -0.61 -23.01 3.33 -811.78 -2.70 -25.71 16 14 C 0.52 19.06 7.84 87.66 0.69 19.74 16 15 O -0.59 -27.18 16.29 -3.06 -0.05 -27.23 16 16 C -0.05 -1.16 5.43 29.10 0.16 -1.00 16 17 C -0.02 -0.45 5.81 24.83 0.14 -0.30 16 18 C -0.21 -5.73 10.81 22.19 0.24 -5.49 16 19 C -0.23 -5.19 10.91 22.19 0.24 -4.95 16 20 C -0.04 -0.92 12.09 66.97 0.81 -0.11 16 21 O -0.19 -5.46 10.65 -2.51 -0.03 -5.49 16 22 C 0.12 5.64 6.09 86.86 0.53 6.17 16 23 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 24 H 0.38 19.51 7.18 -74.06 -0.53 18.98 16 25 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 26 H 0.07 3.17 7.72 -2.38 -0.02 3.15 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.15 2.90 8.14 -2.38 -0.02 2.88 16 30 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.24 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.04 2.14 8.04 -2.39 -0.02 2.12 16 35 H 0.07 3.17 8.03 -2.38 -0.02 3.15 16 Total: -1.00 -66.55 302.32 2.28 -64.27 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.57 Total: 31.87 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.20 Total: -2.83 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -2.47 Total: -70.81 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -2.04 Total: -65.04 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -66.55 2.28 -64.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.731 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds