Wall clock time and date at job start Mon Mar 30 2020 00:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2 12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7 13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9 14 14 C 1.34785 * 125.64558 * 155.90580 * 13 12 11 15 15 O 1.21282 * 119.99607 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99918 * 359.97011 * 14 13 12 17 17 C 1.50703 * 109.46828 * 180.02562 * 16 14 13 18 18 C 1.34511 * 125.79042 * 90.00490 * 17 16 14 19 19 C 1.41386 * 106.84057 * 179.97438 * 18 17 16 20 20 C 1.34521 * 106.84103 * 359.97438 * 19 18 17 21 21 O 1.34297 * 108.41749 * 359.73726 * 20 19 18 22 22 C 1.47020 * 108.70489 * 335.86786 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 25 25 H 1.08989 * 111.00516 * 324.20630 * 11 9 7 26 26 H 1.08995 * 111.00355 * 88.06613 * 11 9 7 27 27 H 1.09003 * 110.36279 * 155.84748 * 12 11 9 28 28 H 1.08993 * 110.36858 * 278.06200 * 12 11 9 29 29 H 1.09000 * 109.47787 * 300.00142 * 16 14 13 30 30 H 1.08997 * 109.47230 * 60.00325 * 16 14 13 31 31 H 1.07998 * 126.58060 * 359.95926 * 18 17 16 32 32 H 1.07998 * 126.58020 * 179.97438 * 19 18 17 33 33 H 1.07994 * 125.78724 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.88085 * 241.63975 * 22 13 12 35 35 H 1.09002 * 109.87937 * 120.47931 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 0.3758 -2.6334 1.2688 12 6 0.2712 -4.1723 1.4134 13 7 1.5924 -4.6806 1.0020 14 6 2.1323 -5.8577 1.3758 15 8 3.2317 -6.1753 0.9739 16 6 1.3701 -6.7788 2.2930 17 6 2.1885 -8.0169 2.5549 18 6 3.0713 -8.1789 3.5567 19 6 3.6053 -9.4815 3.4254 20 6 3.0164 -10.0377 2.3515 21 8 2.1547 -9.1483 1.8319 22 6 2.2231 -3.6915 0.1158 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2040 -1.9078 -1.2839 25 1 0.8733 -2.1928 2.1327 26 1 -0.6071 -2.1877 1.1164 27 1 0.0663 -4.4428 2.4493 28 1 -0.5080 -4.5627 0.7589 29 1 1.1705 -6.2695 3.2358 30 1 0.4266 -7.0589 1.8246 31 1 3.3240 -7.4533 4.3156 32 1 4.3443 -9.9416 4.0647 33 1 3.2020 -11.0323 1.9738 34 1 2.3953 -4.1308 -0.8668 35 1 3.1675 -3.3577 0.5456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:55 Heat of formation + Delta-G solvation = -67.425776 kcal Electronic energy + Delta-G solvation = -19975.500398 eV Core-core repulsion = 16747.351301 eV Total energy + Delta-G solvation = -3228.149097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.49195 -39.47828 -37.31192 -34.36343 -33.09207 -32.24500 -32.05740 -29.74518 -28.47434 -27.00819 -24.89933 -22.44897 -21.69983 -20.73217 -19.74592 -18.85118 -17.34025 -17.22786 -16.79823 -15.65996 -15.52794 -15.08109 -14.98643 -14.21380 -14.12139 -13.82621 -13.07969 -12.83207 -12.77059 -12.64448 -12.24079 -12.05758 -11.76082 -11.50122 -11.42663 -11.38441 -10.94148 -10.65543 -10.48770 -10.15650 -9.84961 -9.56478 -9.37303 -8.71876 -8.39269 -8.26055 -8.06616 -6.32499 -4.40123 1.76617 2.65780 2.94550 3.03073 3.16835 3.26179 3.31108 3.59194 4.24411 4.62151 4.88637 4.97385 5.02439 5.07322 5.28190 5.35167 5.51005 5.69614 5.82567 5.86998 5.96121 5.97653 6.09639 6.21063 6.42126 6.54922 6.65404 6.86558 6.92446 7.18945 7.26434 7.31762 7.69812 7.97644 8.03894 8.54848 8.63419 9.26944 9.35898 10.74887 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.044801 B = 0.004131 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.830476 B = 6776.283592 C = 6950.794505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.246 3.754 10 O -0.586 6.586 11 C -0.134 4.134 12 C 0.092 3.908 13 N -0.608 5.608 14 C 0.522 3.478 15 O -0.544 6.544 16 C -0.058 4.058 17 C 0.015 3.985 18 C -0.201 4.201 19 C -0.213 4.213 20 C -0.044 4.044 21 O -0.173 6.173 22 C 0.123 3.877 23 H 0.268 0.732 24 H 0.383 0.617 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.200 0.800 34 H 0.061 0.939 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -12.273 7.146 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.206 3.794 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.031 4.031 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.422 6.422 16 C -0.098 4.098 17 C -0.036 4.036 18 C -0.220 4.220 19 C -0.233 4.233 20 C -0.112 4.112 21 O -0.069 6.069 22 C 0.002 3.998 23 H 0.078 0.922 24 H 0.233 0.767 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.217 0.783 34 H 0.079 0.921 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.175 -12.958 6.606 14.546 hybrid contribution 0.198 1.413 0.329 1.464 sum 0.024 -11.545 6.936 13.468 Atomic orbital electron populations 1.69700 1.05935 1.27571 1.50332 1.24989 0.95042 0.99548 0.93446 0.86359 0.80216 0.82684 0.77726 1.19576 1.20737 1.20812 1.21571 0.93779 0.90181 1.51811 0.91683 1.19464 0.86956 0.90715 0.82284 1.86123 1.53820 1.54338 1.45183 1.23294 1.02956 0.90050 1.00971 1.22568 0.84274 0.97850 0.98389 1.48627 1.19472 1.17811 1.48160 1.19875 0.86338 0.80965 0.81887 1.90705 1.20645 1.74141 1.56751 1.20097 0.98304 0.89407 1.01996 1.21593 1.01667 0.87305 0.93011 1.21507 1.00338 0.98184 1.01987 1.21775 1.04738 0.95937 1.00809 1.23944 0.94662 0.95640 0.96924 1.83988 1.51994 1.21786 1.49094 1.22078 0.96710 0.88273 0.92747 0.92239 0.76657 0.91388 0.89275 0.92022 0.91709 0.86090 0.87298 0.83622 0.83613 0.78287 0.92089 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.47 10.66 55.43 0.59 -21.88 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.79 8.21 -34.44 -0.28 -14.07 16 8 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 9 C 0.25 5.81 0.85 -89.94 -0.08 5.73 16 10 O -0.59 -14.42 13.09 -35.23 -0.46 -14.88 16 11 C -0.13 -2.77 5.48 -24.58 -0.13 -2.91 16 12 C 0.09 1.56 6.68 -2.53 -0.02 1.55 16 13 N -0.61 -11.73 3.33 -170.53 -0.57 -12.29 16 14 C 0.52 9.72 7.84 -10.98 -0.09 9.63 16 15 O -0.54 -12.22 16.36 5.56 0.09 -12.13 16 16 C -0.06 -0.80 5.24 -29.04 -0.15 -0.95 16 17 C 0.01 0.22 5.81 -35.62 -0.21 0.01 16 18 C -0.20 -2.77 10.81 -39.70 -0.43 -3.20 16 19 C -0.21 -2.60 10.91 -39.70 -0.43 -3.03 16 20 C -0.04 -0.52 12.09 29.42 0.36 -0.17 16 21 O -0.17 -2.59 10.65 5.71 0.06 -2.53 16 22 C 0.12 2.76 6.22 -3.07 -0.02 2.75 16 23 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 24 H 0.38 9.41 7.41 45.56 0.34 9.75 16 25 H 0.07 1.45 8.04 -51.94 -0.42 1.03 16 26 H 0.09 1.92 7.55 -51.93 -0.39 1.52 16 27 H 0.06 0.83 7.48 -51.93 -0.39 0.45 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.12 1.30 7.85 -51.93 -0.41 0.89 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -30.16 300.74 -6.08 -36.24 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -3.73 Total: 10.91 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.58 Total: -2.93 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.02 Total: -34.17 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.31 Total: -29.53 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.16 -6.08 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.188 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds