Wall clock time and date at job start Mon Mar 30 2020 00:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47029 * 269.99514 * 3 2 1 5 5 H 1.48501 * 109.47396 * 29.99197 * 3 2 1 6 6 H 1.48497 * 109.47044 * 149.99698 * 3 2 1 7 7 C 1.37882 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99420 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00258 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.64072 * 298.31370 * 9 7 2 11 11 C 1.55158 * 110.71883 * 61.45003 * 9 7 2 12 12 C 1.54917 * 101.57978 * 153.86614 * 11 9 7 13 13 N 1.47422 * 104.83074 * 322.98980 * 12 11 9 14 14 C 1.34776 * 125.64527 * 204.09182 * 13 12 11 15 15 O 1.21285 * 119.99841 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00365 * 0.03003 * 14 13 12 17 17 C 1.50699 * 109.47121 * 180.02562 * 16 14 13 18 18 C 1.41380 * 126.57383 * 269.70622 * 17 16 14 19 19 C 1.34519 * 106.83887 * 179.83999 * 18 17 16 20 20 O 1.34303 * 108.41950 * 0.42526 * 19 18 17 21 21 C 1.34300 * 109.47459 * 359.73097 * 20 19 18 22 22 C 1.47020 * 108.70191 * 24.12901 * 13 12 11 23 23 H 0.97005 * 120.00230 * 0.02562 * 1 2 3 24 24 H 0.96698 * 113.99913 * 61.68644 * 10 9 7 25 25 H 1.08998 * 111.00511 * 35.79146 * 11 9 7 26 26 H 1.08996 * 111.04098 * 271.95479 * 11 9 7 27 27 H 1.08998 * 110.36726 * 81.82993 * 12 11 9 28 28 H 1.09005 * 110.36534 * 204.15515 * 12 11 9 29 29 H 1.09004 * 109.47135 * 299.99842 * 16 14 13 30 30 H 1.08993 * 109.47035 * 59.99497 * 16 14 13 31 31 H 1.08000 * 126.58297 * 359.97438 * 18 17 16 32 32 H 1.07995 * 125.79211 * 180.11997 * 19 18 17 33 33 H 1.08008 * 125.78969 * 180.02562 * 21 20 19 34 34 H 1.09000 * 109.88493 * 239.51822 * 22 13 12 35 35 H 1.09003 * 109.87996 * 118.35911 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3764 -2.6280 -1.2745 12 6 0.2719 -4.1663 -1.4258 13 7 1.5929 -4.6763 -1.0160 14 6 2.1330 -5.8517 -1.3946 15 8 3.2322 -6.1711 -0.9937 16 6 1.3712 -6.7691 -2.3160 17 6 2.1892 -8.0065 -2.5819 18 6 3.1176 -8.1932 -3.6317 19 6 3.6190 -9.4337 -3.4924 20 8 3.0399 -10.0082 -2.4255 21 6 2.1718 -9.1474 -1.8695 22 6 2.2232 -3.6910 -0.1253 23 1 -0.4851 0.8401 -0.0004 24 1 -0.2287 -1.9339 1.2623 25 1 0.8742 -2.1836 -2.1364 26 1 -0.6067 -2.1829 -1.1214 27 1 -0.5063 -4.5597 -0.7718 28 1 0.0675 -4.4324 -2.4629 29 1 0.4275 -7.0512 -1.8492 30 1 1.1720 -6.2557 -3.2566 31 1 3.3763 -7.4767 -4.3972 32 1 4.3580 -9.8918 -4.1330 33 1 1.5634 -9.3385 -0.9978 34 1 3.1678 -3.3552 -0.5532 35 1 2.3950 -4.1344 0.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:52 Heat of formation + Delta-G solvation = -89.785092 kcal Electronic energy + Delta-G solvation = -19946.341721 eV Core-core repulsion = 16717.223052 eV Total energy + Delta-G solvation = -3229.118669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.41823 -40.98477 -38.98169 -36.07771 -34.91826 -34.21037 -31.87631 -31.00547 -30.10702 -28.73176 -26.71014 -23.98175 -22.46706 -21.97794 -21.26772 -20.13746 -19.15535 -18.30143 -18.09906 -16.99085 -16.87314 -16.77618 -16.33633 -15.98069 -15.47255 -15.31884 -14.80568 -14.31764 -13.87057 -13.68745 -13.61224 -13.43206 -13.27964 -13.15771 -13.10468 -12.65504 -12.48556 -12.37677 -12.28192 -11.97229 -11.26651 -11.05801 -10.66085 -10.49230 -10.14122 -9.60636 -9.40493 -8.25141 -6.39389 0.89860 1.40589 1.44080 1.52624 1.58930 1.65212 2.20454 2.34692 2.40893 3.00328 3.66079 3.83478 3.93813 3.97508 4.02688 4.16630 4.33661 4.43527 4.55660 4.58591 4.61455 4.70750 4.81474 4.93751 5.12542 5.19123 5.26909 5.32450 5.47821 5.54747 5.59878 5.76513 6.08565 6.22113 6.60380 6.67430 7.18292 7.30977 7.40752 8.80700 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.044314 B = 0.004105 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.706424 B = 6819.458005 C = 6998.523109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.566 4.566 8 H 0.048 0.952 9 C 0.234 3.766 10 O -0.592 6.592 11 C -0.126 4.126 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.517 3.483 15 O -0.591 6.591 16 C -0.054 4.054 17 C -0.183 4.183 18 C -0.224 4.224 19 C -0.044 4.044 20 O -0.189 6.189 21 C -0.038 4.038 22 C 0.129 3.871 23 H 0.272 0.728 24 H 0.380 0.620 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.236 0.764 33 H 0.221 0.779 34 H 0.054 0.946 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -13.096 -8.454 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.401 6.401 11 C -0.165 4.165 12 C -0.019 4.019 13 N -0.346 5.346 14 C 0.308 3.692 15 O -0.472 6.472 16 C -0.093 4.093 17 C -0.185 4.185 18 C -0.243 4.243 19 C -0.110 4.110 20 O -0.085 6.085 21 C -0.106 4.106 22 C 0.006 3.994 23 H 0.082 0.918 24 H 0.230 0.770 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.172 0.828 32 H 0.252 0.748 33 H 0.237 0.763 34 H 0.072 0.928 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.028 -14.028 -8.069 16.216 hybrid contribution 0.294 1.999 0.162 2.027 sum -0.733 -12.029 -7.907 14.413 Atomic orbital electron populations 1.69739 1.06425 1.28408 1.49642 1.25545 0.95880 1.01767 0.92968 0.85579 0.78549 0.79269 0.78337 1.19844 1.20221 1.20432 1.21734 0.93323 0.92013 1.53358 0.93396 1.19585 0.87565 0.90282 0.83130 1.86114 1.51812 1.56299 1.45891 1.23075 1.01438 0.93148 0.98789 1.22583 0.83431 0.94626 1.01252 1.48752 1.20032 1.18205 1.47628 1.21100 0.86074 0.80550 0.81460 1.90652 1.22905 1.74928 1.58679 1.19990 0.98095 0.91131 1.00124 1.20099 1.03035 0.96186 0.99138 1.21983 1.01234 0.98762 1.02292 1.24633 1.01447 0.94215 0.90746 1.84048 1.45458 1.41862 1.37112 1.24262 0.96620 0.89139 1.00566 1.21734 0.96203 0.89025 0.92419 0.91843 0.77023 0.92559 0.90090 0.90576 0.87747 0.85458 0.85907 0.82842 0.74756 0.76250 0.92769 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.31 10.67 21.45 0.23 -45.08 16 2 C 0.04 2.04 5.28 84.66 0.45 2.49 16 3 Si 0.96 41.17 29.54 68.60 2.03 43.20 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.57 -30.07 8.21 25.60 0.21 -29.86 16 8 H 0.05 2.62 7.57 -2.91 -0.02 2.59 16 9 C 0.23 11.31 0.85 -10.36 -0.01 11.30 16 10 O -0.59 -29.62 13.08 -148.98 -1.95 -31.57 16 11 C -0.13 -5.19 5.47 31.99 0.17 -5.01 16 12 C 0.10 3.31 6.68 86.86 0.58 3.89 16 13 N -0.61 -23.32 3.33 -811.80 -2.70 -26.02 16 14 C 0.52 18.63 7.84 87.66 0.69 19.31 16 15 O -0.59 -26.38 16.36 -3.05 -0.05 -26.43 16 16 C -0.05 -1.32 5.22 29.10 0.15 -1.17 16 17 C -0.18 -4.73 4.66 -19.94 -0.09 -4.82 16 18 C -0.22 -5.39 10.87 22.19 0.24 -5.15 16 19 C -0.04 -0.91 12.09 66.97 0.81 -0.10 16 20 O -0.19 -4.55 10.65 -2.46 -0.03 -4.57 16 21 C -0.04 -0.92 12.01 66.97 0.80 -0.11 16 22 C 0.13 5.99 6.22 86.73 0.54 6.53 16 23 H 0.27 12.96 8.31 -92.70 -0.77 12.19 16 24 H 0.38 18.88 7.46 -74.06 -0.55 18.33 16 25 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 26 H 0.08 3.45 7.54 -2.39 -0.02 3.43 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.10 2.51 7.48 -2.38 -0.02 2.49 16 29 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.12 2.44 7.85 -2.39 -0.02 2.42 16 31 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.24 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.22 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.05 2.64 7.66 -2.39 -0.02 2.62 16 35 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -66.06 300.78 2.63 -63.43 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.56 Total: 29.75 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.54 Total: -2.70 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -2.47 Total: -71.10 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -2.02 Total: -62.58 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -66.06 2.63 -63.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.353 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds