Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99959 * 2 1 4 4 H 1.08995 * 109.46921 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.46883 * 239.99464 * 3 2 1 6 6 C 1.50700 * 109.46934 * 119.99676 * 3 2 1 7 7 O 1.21279 * 120.00113 * 115.00053 * 6 3 2 8 8 N 1.34784 * 119.99961 * 294.99821 * 6 3 2 9 9 C 1.46493 * 119.99864 * 359.72839 * 8 6 3 10 10 C 1.50702 * 109.47427 * 89.99800 * 9 8 6 11 11 H 1.07999 * 119.99972 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99945 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00264 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99887 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47089 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46706 * 120.00063 * 14 12 10 17 17 H 1.48497 * 109.47206 * 240.00218 * 14 12 10 18 18 C 1.46494 * 119.99635 * 180.02562 * 8 6 3 19 19 C 1.50694 * 109.47248 * 90.00174 * 18 8 6 20 20 C 1.34518 * 125.79109 * 89.71217 * 19 18 8 21 21 C 1.41379 * 106.84081 * 179.88955 * 20 19 18 22 22 C 1.34517 * 106.84453 * 0.37363 * 21 20 19 23 23 O 1.34302 * 125.79050 * 270.02210 * 19 18 8 24 24 H 1.07999 * 120.00267 * 179.97438 * 1 2 3 25 25 H 1.08006 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00017 * 179.97438 * 2 1 3 27 27 H 0.96693 * 114.00380 * 300.00320 * 5 3 2 28 28 H 1.09002 * 109.47192 * 209.99937 * 9 8 6 29 29 H 1.08996 * 109.47342 * 329.99648 * 9 8 6 30 30 H 0.96991 * 120.00123 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.47006 * 210.00121 * 18 8 6 32 32 H 1.09004 * 109.47665 * 329.99813 * 18 8 6 33 33 H 1.08003 * 126.58034 * 0.02919 * 20 19 18 34 34 H 1.08009 * 126.57755 * 180.16426 * 21 20 19 35 35 H 1.07991 * 125.78968 * 179.75124 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1335 -0.0005 5 8 2.8852 1.3807 -1.1667 6 6 2.9299 1.3850 1.2305 7 8 4.1376 1.4043 1.1217 8 7 2.3625 1.4349 2.4521 9 6 0.9035 1.4176 2.5833 10 6 0.4262 -0.0073 2.6969 11 1 1.1384 -0.8189 2.6742 12 6 -0.9197 -0.2749 2.8310 13 7 -1.7870 0.7134 2.8592 14 14 -1.5113 -2.0411 2.9726 15 1 -0.3459 -2.9596 2.9148 16 1 -2.2210 -2.2233 4.2643 17 1 -2.4372 -2.3443 1.8519 18 6 3.2047 1.5131 3.6482 19 6 3.4637 2.9585 3.9866 20 6 2.7035 3.7277 4.7865 21 6 3.3116 5.0034 4.8266 22 6 4.4025 4.9400 4.0421 23 8 4.4896 3.6989 3.5360 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 3.5406 0.6729 -1.2328 28 1 0.6124 1.9706 3.4764 29 1 0.4543 1.8823 1.7057 30 1 -2.7338 0.5252 2.9532 31 1 2.6963 1.0300 4.4827 32 1 4.1523 1.0087 3.4590 33 1 1.8027 3.4276 5.3013 34 1 2.9647 5.8647 5.3782 35 1 5.0912 5.7496 3.8515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597024544.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -41.114399 kcal Electronic energy + Delta-G solvation = -20701.878035 eV Core-core repulsion = 17474.869885 eV Total energy + Delta-G solvation = -3227.008150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18993 -39.48966 -36.24799 -35.36564 -33.14855 -32.54109 -32.21337 -30.31627 -27.40121 -26.91068 -24.58243 -23.04210 -21.35671 -20.49473 -19.82642 -18.94726 -17.17506 -16.83488 -16.46845 -16.24094 -15.76144 -15.09352 -14.62845 -14.49716 -14.12887 -13.81747 -12.93930 -12.57452 -12.48403 -12.47004 -12.39926 -12.14336 -11.80881 -11.64845 -11.32459 -11.06076 -11.00197 -10.82639 -10.29425 -10.06274 -9.86992 -9.59037 -9.14930 -8.67311 -8.34091 -8.10998 -7.91361 -6.24199 -4.24947 2.01455 2.89059 2.98882 3.14197 3.23755 3.26370 3.28943 3.50639 3.92799 4.26999 4.97442 5.05560 5.10756 5.23331 5.34105 5.40176 5.57989 5.65831 5.75600 6.00790 6.10050 6.23504 6.26082 6.41118 6.59268 6.67199 6.82086 7.07968 7.33815 7.36968 7.51240 7.55292 7.70206 7.93200 7.97819 8.19393 8.70662 8.87401 9.36009 10.82871 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.007710 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.595166 B = 3630.689559 C = 4691.570533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.211 4.211 3 C 0.136 3.864 4 H 0.119 0.881 5 O -0.546 6.546 6 C 0.493 3.507 7 O -0.562 6.562 8 N -0.586 5.586 9 C 0.235 3.765 10 C -0.520 4.520 11 H 0.062 0.938 12 C 0.070 3.930 13 N -0.889 5.889 14 Si 0.884 3.116 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.281 1.281 18 C 0.195 3.805 19 C -0.016 4.016 20 C -0.203 4.203 21 C -0.217 4.217 22 C -0.052 4.052 23 O -0.167 6.167 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.377 0.623 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 3.184 0.589 6.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.229 4.229 3 C 0.075 3.925 4 H 0.136 0.864 5 O -0.351 6.351 6 C 0.281 3.719 7 O -0.442 6.442 8 N -0.318 5.318 9 C 0.116 3.884 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.133 4.133 13 N -0.527 5.527 14 Si 0.712 3.288 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.207 1.207 18 C 0.071 3.929 19 C -0.068 4.068 20 C -0.223 4.223 21 C -0.236 4.236 22 C -0.120 4.120 23 O -0.062 6.062 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.225 0.775 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.631 3.637 0.226 6.707 hybrid contribution -0.503 -1.190 0.722 1.480 sum 5.128 2.446 0.948 5.760 Atomic orbital electron populations 1.23456 0.95080 1.01406 0.92012 1.22506 0.96382 0.96079 1.07977 1.20736 0.90559 0.98283 0.82968 0.86375 1.86545 1.51681 1.55217 1.41609 1.21504 0.88829 0.75663 0.85949 1.90619 1.14917 1.51847 1.86804 1.48311 1.09620 1.70077 1.03790 1.19591 0.72260 0.97832 0.98711 1.21415 0.92190 0.92032 1.50290 0.91968 1.24799 0.96486 0.96893 0.95097 1.69917 1.02395 1.30797 1.49598 0.86658 0.78998 0.85201 0.77969 1.19675 1.20965 1.20723 1.19703 0.96962 0.86282 0.89968 1.23236 0.88753 0.95959 0.98822 1.21672 1.02444 0.93658 1.04479 1.21790 0.97972 0.99061 1.04771 1.23970 1.01527 0.86468 1.00085 1.84110 1.43444 1.20836 1.57830 0.89248 0.88549 0.87986 0.77546 0.94474 0.94334 0.92586 0.86987 0.89342 0.83337 0.83856 0.78692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.13 29.01 0.29 -1.26 16 2 C -0.21 -3.90 7.15 -36.03 -0.26 -4.16 16 3 C 0.14 2.60 3.00 -29.03 -0.09 2.52 16 4 H 0.12 2.27 6.76 -51.93 -0.35 1.92 16 5 O -0.55 -9.98 12.98 -55.09 -0.72 -10.70 16 6 C 0.49 10.37 7.07 -10.98 -0.08 10.29 16 7 O -0.56 -12.89 15.90 -14.30 -0.23 -13.12 16 8 N -0.59 -12.03 2.44 -176.44 -0.43 -12.46 16 9 C 0.24 5.20 4.69 -5.20 -0.02 5.17 16 10 C -0.52 -12.12 5.83 -34.44 -0.20 -12.32 16 11 H 0.06 1.50 7.80 -52.49 -0.41 1.09 16 12 C 0.07 1.68 4.33 -17.82 -0.08 1.60 16 13 N -0.89 -22.42 13.29 55.43 0.74 -21.68 16 14 Si 0.88 19.16 29.54 -169.99 -5.02 14.14 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.19 3.60 5.93 -5.20 -0.03 3.57 16 19 C -0.02 -0.29 6.90 -35.63 -0.25 -0.54 16 20 C -0.20 -3.40 10.81 -39.70 -0.43 -3.83 16 21 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 22 C -0.05 -0.76 12.09 29.42 0.36 -0.41 16 23 O -0.17 -3.07 10.65 5.70 0.06 -3.01 16 24 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 25 H 0.10 1.88 7.40 -52.48 -0.39 1.49 16 26 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.38 5.85 8.78 45.56 0.40 6.25 16 28 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.04 0.89 5.18 -51.93 -0.27 0.62 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.11 1.91 8.07 -51.93 -0.42 1.49 16 32 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 33 H 0.15 2.37 8.06 -52.48 -0.42 1.95 16 34 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -28.41 303.05 -5.73 -34.14 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.49 Total: 11.10 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.21 Total: -2.97 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.31 Total: -34.14 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.88 Total: -26.83 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.41 -5.73 -34.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597024544.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.974 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds