Wall clock time and date at job start Sun Mar 29 2020 23:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47275 * 120.00128 * 3 2 1 6 6 H 1.48501 * 109.47305 * 240.00164 * 3 2 1 7 7 C 1.40273 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00194 * 160.73886 * 7 2 1 9 9 C 1.40891 * 119.99571 * 340.74281 * 7 2 1 10 10 C 1.40712 * 120.32906 * 325.79352 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38824 * 120.57302 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67578 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09183 * 359.69536 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28231 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47485 * 154.99621 * 18 17 15 20 20 O 1.42898 * 109.46794 * 65.00219 * 19 18 17 21 21 C 1.52997 * 109.47109 * 274.99992 * 18 17 15 22 22 O 1.42899 * 109.47106 * 294.99375 * 21 18 17 23 23 H 0.97003 * 120.00071 * 174.83473 * 1 2 3 24 24 H 1.07997 * 120.05467 * 359.95598 * 10 9 7 25 25 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 26 26 H 1.07988 * 119.66507 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.95864 * 179.97438 * 13 12 11 28 28 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 29 29 H 1.09009 * 109.46903 * 34.99807 * 18 17 15 30 30 H 1.09003 * 109.47450 * 184.99939 * 19 18 17 31 31 H 1.08997 * 109.47040 * 305.00520 * 19 18 17 32 32 H 0.96708 * 114.00042 * 180.02562 * 20 19 18 33 33 H 1.09006 * 109.47288 * 54.99865 * 21 18 17 34 34 H 1.09002 * 109.47269 * 175.00016 * 21 18 17 35 35 H 0.96699 * 114.00037 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7465 0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0940 1.6965 -1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0424 -1.2408 -0.3091 9 6 1.3624 -2.4009 0.4014 10 6 0.3864 -2.3706 1.4145 11 6 -0.2385 -3.5346 1.7995 12 6 0.0855 -4.7425 1.1969 13 6 1.0414 -4.7994 0.2001 14 6 1.6870 -3.6377 -0.2151 15 6 2.7028 -3.6925 -1.2823 16 8 3.2197 -2.6672 -1.6829 17 7 3.0584 -4.8789 -1.8138 18 6 4.0681 -4.9334 -2.8738 19 6 4.7358 -6.3100 -2.8719 20 8 3.7720 -7.3073 -3.2162 21 6 3.3989 -4.6931 -4.2285 22 8 2.4964 -5.7645 -4.5107 23 1 -0.4850 -0.8367 -0.0756 24 1 0.1285 -1.4355 1.8893 25 1 -0.9875 -3.5080 2.5771 26 1 -0.4137 -5.6472 1.5107 27 1 1.2848 -5.7455 -0.2604 28 1 2.6458 -5.6966 -1.4946 29 1 4.8206 -4.1644 -2.6987 30 1 5.5467 -6.3216 -3.6002 31 1 5.1356 -6.5185 -1.8795 32 1 4.1262 -8.2070 -3.2342 33 1 2.8487 -3.7524 -4.2002 34 1 4.1606 -4.6452 -5.0067 35 1 2.0351 -5.6778 -5.3562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601396662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:26 Heat of formation + Delta-G solvation = -145.112921 kcal Electronic energy + Delta-G solvation = -20283.524233 eV Core-core repulsion = 17052.006369 eV Total energy + Delta-G solvation = -3231.517864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96433 -39.25971 -38.15242 -36.84262 -35.93494 -35.00893 -32.28150 -31.35710 -30.30165 -27.11712 -26.64497 -24.44336 -22.91334 -21.87276 -21.14988 -19.91789 -18.80028 -18.05322 -17.67512 -17.21780 -16.55415 -16.14535 -15.92504 -15.86927 -15.47363 -15.03064 -14.83084 -14.39173 -14.31726 -13.97356 -13.77495 -13.23341 -13.03556 -12.87845 -12.70334 -12.49787 -12.02482 -12.00503 -11.93675 -11.46387 -10.98226 -10.95799 -10.70463 -10.33531 -9.95655 -9.61426 -9.50187 -9.10315 -6.46609 0.39573 0.89755 1.46180 1.61834 1.76667 2.23828 2.31067 2.40176 2.73889 3.39498 3.45917 3.57555 3.88661 4.20912 4.25836 4.28587 4.41690 4.44455 4.50953 4.51805 4.69145 4.87422 4.88607 4.92203 5.13715 5.42138 5.60667 5.66278 5.71798 5.89390 5.96299 6.19756 6.32559 6.69944 6.85605 6.93107 6.95185 7.07278 7.60921 8.03595 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.006551 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.582656 B = 4272.828793 C = 5247.457974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C -0.004 4.004 3 Si 1.117 2.883 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.226 4.226 11 C -0.071 4.071 12 C -0.245 4.245 13 C -0.042 4.042 14 C -0.284 4.284 15 C 0.558 3.442 16 O -0.580 6.580 17 N -0.713 5.713 18 C 0.137 3.863 19 C 0.084 3.916 20 O -0.560 6.560 21 C 0.074 3.926 22 O -0.552 6.552 23 H 0.282 0.718 24 H 0.091 0.909 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.405 0.595 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.388 0.612 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -11.685 -5.381 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.101 0.899 9 C 0.091 3.909 10 C -0.245 4.245 11 C -0.090 4.090 12 C -0.264 4.264 13 C -0.061 4.061 14 C -0.289 4.289 15 C 0.351 3.649 16 O -0.462 6.462 17 N -0.366 5.366 18 C 0.032 3.968 19 C 0.006 3.994 20 O -0.366 6.366 21 C -0.006 4.006 22 O -0.357 6.357 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.145 0.855 28 H 0.242 0.758 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.030 0.970 34 H 0.091 0.909 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.810 -9.035 -5.080 12.402 hybrid contribution -0.068 -2.025 -0.430 2.071 sum 6.742 -11.060 -5.510 14.076 Atomic orbital electron populations 1.70501 1.08664 1.33031 1.31993 1.28518 0.95833 1.07442 0.90071 0.83017 0.74783 0.69976 0.78840 1.18874 1.18267 1.19571 1.21105 1.01185 0.93503 1.37970 0.89945 1.17913 0.90429 0.92920 0.89595 1.21215 1.04240 0.97805 1.01229 1.21154 0.97266 0.92544 0.98029 1.20796 1.04514 0.97742 1.03359 1.21131 0.94042 0.95888 0.95043 1.19839 1.08484 0.95822 1.04754 1.18432 0.81739 0.83055 0.81687 1.90636 1.56639 1.34719 1.64191 1.45705 1.43274 1.08361 1.39260 1.21324 0.90709 0.98529 0.86204 1.22216 0.90771 0.86301 1.00150 1.86745 1.37936 1.19150 1.92817 1.22385 0.92913 0.88737 0.96545 1.86684 1.59931 1.45597 1.43478 0.90606 0.89122 0.85625 0.84688 0.85483 0.75838 0.88671 0.90136 0.92580 0.76395 0.96976 0.90907 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.55 12.57 21.88 0.28 -46.28 16 2 C 0.00 -0.20 5.04 85.37 0.43 0.23 16 3 Si 1.12 47.53 29.98 68.60 2.06 49.59 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.51 -29.97 7.65 23.41 0.18 -29.79 16 8 H 0.08 5.09 5.92 -2.91 -0.02 5.07 16 9 C 0.10 5.37 5.17 -21.11 -0.11 5.26 16 10 C -0.23 -11.71 7.87 22.72 0.18 -11.53 16 11 C -0.07 -3.11 10.01 22.26 0.22 -2.88 16 12 C -0.25 -9.80 10.03 22.41 0.22 -9.57 16 13 C -0.04 -1.78 9.53 22.51 0.21 -1.57 16 14 C -0.28 -14.38 5.92 -19.70 -0.12 -14.50 16 15 C 0.56 26.99 7.69 86.67 0.67 27.66 16 16 O -0.58 -32.05 13.22 -4.06 -0.05 -32.11 16 17 N -0.71 -26.41 4.96 -445.79 -2.21 -28.62 16 18 C 0.14 4.16 2.86 44.99 0.13 4.29 16 19 C 0.08 1.75 6.79 71.98 0.49 2.24 16 20 O -0.56 -11.89 10.95 -126.65 -1.39 -13.27 16 21 C 0.07 2.16 6.85 71.98 0.49 2.65 16 22 O -0.55 -15.32 11.17 -126.65 -1.41 -16.73 16 23 H 0.28 16.59 6.55 -92.71 -0.61 15.98 16 24 H 0.09 4.89 6.94 -2.91 -0.02 4.87 16 25 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 26 H 0.14 4.33 8.06 -2.92 -0.02 4.30 16 27 H 0.13 4.40 6.41 -2.91 -0.02 4.39 16 28 H 0.41 13.73 6.42 -92.71 -0.60 13.13 16 29 H 0.10 3.07 7.58 -2.38 -0.02 3.05 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.39 4.41 9.12 -74.05 -0.68 3.73 16 33 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.38 7.49 9.12 -74.06 -0.68 6.81 16 Total: -1.00 -74.31 296.33 -0.36 -74.68 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.63 Total: 40.26 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.00 Total: -27.52 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.93 Total: -74.89 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -2.86 Total: -62.12 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.06 Total: 49.59 kcal Total: -74.31 -0.36 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601396662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.435 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds