Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 C 1.52997 * 109.46902 * 120.00176 * 2 1 3 5 5 O 1.42906 * 109.47032 * 174.99878 * 4 2 1 6 6 C 1.35421 * 116.99741 * 179.97438 * 5 4 2 7 7 N 1.32217 * 119.80829 * 0.02562 * 6 5 4 8 8 C 1.31894 * 121.80729 * 179.97438 * 7 6 5 9 9 C 1.38373 * 121.20452 * 0.02562 * 8 7 6 10 10 C 1.38307 * 119.47207 * 359.97438 * 9 8 7 11 11 C 1.40079 * 118.33783 * 0.02562 * 10 9 8 12 12 C 1.47336 * 120.60346 * 180.02562 * 11 10 9 13 13 O 1.21546 * 119.99954 * 180.02562 * 12 11 10 14 14 O 1.34777 * 120.00188 * 0.02562 * 12 11 10 15 15 C 1.34866 * 116.99986 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00217 * 0.02562 * 15 14 12 17 17 C 1.38800 * 119.99593 * 179.97438 * 15 14 12 18 18 N 1.31422 * 119.99418 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47033 * 89.99913 * 19 17 15 21 21 H 1.48499 * 109.46699 * 209.99738 * 19 17 15 22 22 H 1.48502 * 109.46952 * 329.99799 * 19 17 15 23 23 H 1.08999 * 109.46992 * 300.00246 * 1 2 3 24 24 H 1.09006 * 109.46738 * 59.99766 * 1 2 3 25 25 H 1.08995 * 109.47557 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46992 * 239.99754 * 2 1 3 27 27 H 1.09004 * 109.46990 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47491 * 299.99745 * 3 2 1 29 29 H 1.09002 * 109.47135 * 60.00455 * 3 2 1 30 30 H 1.08994 * 109.47427 * 54.99823 * 4 2 1 31 31 H 1.09001 * 109.47377 * 294.99649 * 4 2 1 32 32 H 1.08000 * 119.39769 * 179.97438 * 8 7 6 33 33 H 1.08002 * 120.26260 * 180.02562 * 9 8 7 34 34 H 1.07995 * 120.83303 * 180.02562 * 10 9 8 35 35 H 0.97004 * 119.99412 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1920 6 6 4.0783 -1.4403 2.2297 7 7 3.3582 -1.9135 3.2325 8 6 3.9151 -2.5209 4.2623 9 6 5.2862 -2.6901 4.3392 10 6 6.0889 -2.2148 3.3180 11 6 5.4757 -1.5730 2.2343 12 6 6.2828 -1.0480 1.1191 13 8 5.7394 -0.4926 0.1844 14 8 7.6237 -1.1835 1.1353 15 6 8.3026 -0.6813 0.0837 16 1 7.7701 -0.1969 -0.7213 17 6 9.6858 -0.7862 0.0367 18 7 10.3474 -0.2964 -0.9877 19 14 10.6069 -1.6236 1.4296 20 1 10.7354 -3.0737 1.1367 21 1 11.9589 -1.0233 1.5601 22 1 9.8587 -1.4393 2.6990 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1584 2.1370 32 1 3.2895 -2.8922 5.0606 33 1 5.7261 -3.1902 5.1894 34 1 7.1614 -2.3353 3.3552 35 1 11.3142 -0.3694 -1.0204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728672851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = -111.028216 kcal Electronic energy + Delta-G solvation = -19910.531199 eV Core-core repulsion = 16680.491358 eV Total energy + Delta-G solvation = -3230.039840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95788 -40.72711 -39.27559 -37.35013 -36.23392 -34.56328 -33.73960 -31.70014 -28.11164 -28.07775 -27.48093 -25.51499 -23.98752 -22.24492 -21.17955 -20.19039 -19.53153 -18.86015 -17.91093 -17.40137 -17.07347 -16.62412 -16.03265 -15.94853 -15.69149 -15.20350 -14.80295 -14.49965 -14.43031 -13.96722 -13.95351 -13.56001 -13.30520 -13.29731 -13.03844 -12.42880 -12.35239 -12.29319 -12.09855 -11.87245 -11.73198 -11.62048 -11.26247 -11.04888 -10.84381 -10.74292 -9.59727 -8.56369 -6.41612 -0.40265 0.21502 1.32425 1.36488 1.53802 1.74390 1.94887 2.23013 2.30729 2.71637 2.96127 3.28323 3.69947 3.81370 3.87169 3.95342 4.00288 4.14990 4.32991 4.46318 4.53669 4.61474 4.63066 4.74908 4.89463 4.95604 4.96932 5.11580 5.15512 5.30198 5.36157 5.43775 5.48121 5.86154 6.25138 6.50365 6.69277 6.79023 7.55541 8.56777 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.005922 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.859311 B = 4727.213378 C = 5999.424896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.144 4.144 4 C 0.069 3.931 5 O -0.300 6.300 6 C 0.355 3.645 7 N -0.550 5.550 8 C 0.171 3.829 9 C -0.202 4.202 10 C -0.001 4.001 11 C -0.212 4.212 12 C 0.454 3.546 13 O -0.554 6.554 14 O -0.250 6.250 15 C -0.407 4.407 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.985 3.015 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.243 1.243 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.217 0.783 33 H 0.192 0.808 34 H 0.155 0.845 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 -5.780 14.315 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.006 4.006 5 O -0.205 6.205 6 C 0.177 3.823 7 N -0.275 5.275 8 C 0.014 3.986 9 C -0.221 4.221 10 C -0.026 4.026 11 C -0.216 4.216 12 C 0.301 3.699 13 O -0.450 6.450 14 O -0.159 6.159 15 C -0.482 4.482 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.803 3.197 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.166 1.166 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.209 0.791 34 H 0.173 0.827 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.522 -5.334 13.631 22.073 hybrid contribution 1.457 0.141 -0.587 1.577 sum -15.065 -5.192 13.043 20.593 Atomic orbital electron populations 1.21703 0.90826 1.03037 1.03397 1.21208 0.97879 0.96183 0.96362 1.21780 0.99931 0.95848 1.02608 1.23012 0.76441 1.01452 0.99698 1.86536 1.24425 1.70664 1.38877 1.19886 0.87603 0.88175 0.86686 1.67632 1.39543 1.16950 1.03407 1.23615 0.93979 0.88016 0.92945 1.22425 0.94342 1.04364 1.01002 1.22076 1.02216 0.88684 0.89630 1.19306 0.90908 1.12856 0.98558 1.21175 0.81697 0.80017 0.86967 1.90696 1.72739 1.43863 1.37678 1.83516 1.18961 1.69316 1.44148 1.20328 0.90763 1.38742 0.98416 0.92901 1.25647 0.95423 0.96560 1.00906 1.69703 1.09768 1.44535 1.31614 0.85073 0.77358 0.78832 0.78417 1.18110 1.18880 1.16608 0.91166 0.90801 0.91446 0.92040 0.95588 0.91226 0.91569 0.90860 0.90841 0.76688 0.79071 0.82715 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.19 71.98 0.66 -1.66 16 2 C -0.10 -2.58 3.16 -10.79 -0.03 -2.62 16 3 C -0.14 -4.10 9.09 71.98 0.65 -3.44 16 4 C 0.07 2.00 4.69 71.98 0.34 2.34 16 5 O -0.30 -12.10 7.75 -66.34 -0.51 -12.61 16 6 C 0.36 13.30 7.51 85.16 0.64 13.94 16 7 N -0.55 -15.53 9.21 -307.93 -2.83 -18.36 16 8 C 0.17 3.23 11.17 84.72 0.95 4.17 16 9 C -0.20 -3.85 10.09 22.32 0.23 -3.63 16 10 C 0.00 -0.02 9.73 22.73 0.22 0.20 16 11 C -0.21 -8.66 5.90 -19.92 -0.12 -8.78 16 12 C 0.45 24.39 7.83 70.22 0.55 24.94 16 13 O -0.55 -33.88 14.44 26.66 0.39 -33.49 16 14 O -0.25 -14.07 7.90 10.76 0.08 -13.99 16 15 C -0.41 -26.13 10.11 67.95 0.69 -25.44 16 16 H 0.05 3.89 7.09 -2.91 -0.02 3.87 16 17 C 0.01 0.85 5.50 84.89 0.47 1.32 16 18 N -0.92 -56.59 13.96 21.63 0.30 -56.28 16 19 Si 0.98 43.43 28.62 68.60 1.96 45.39 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.24 -9.95 7.11 99.48 0.71 -9.25 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.02 0.95 7.82 -2.38 -0.02 0.93 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 32 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.16 4.50 7.70 -2.91 -0.02 4.48 16 35 H 0.29 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -82.84 309.25 5.71 -77.13 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.09 Total: 10.86 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.24 Total: 1.36 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.53 Total: -74.64 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -0.04 Total: -60.10 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.96 Total: 45.39 kcal Total: -82.84 5.71 -77.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728672851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.897 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds