Wall clock time and date at job start Mon Mar 30 2020 00:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35638 * 117.00597 * 2 1 4 4 C 1.39360 * 120.53702 * 0.27603 * 3 2 1 5 5 C 1.38287 * 118.43630 * 180.22133 * 4 3 2 6 6 C 1.50706 * 120.27222 * 179.78455 * 5 4 3 7 7 C 1.38801 * 119.45392 * 359.50173 * 5 4 3 8 8 N 1.31346 * 121.07283 * 0.25537 * 7 5 4 9 9 C 1.32894 * 121.69846 * 0.02562 * 8 7 5 10 10 C 1.47703 * 119.79217 * 179.97438 * 9 8 7 11 11 O 1.21474 * 120.00017 * 179.97438 * 10 9 8 12 12 O 1.34729 * 120.00103 * 359.97438 * 10 9 8 13 13 C 1.45201 * 117.00300 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47065 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47004 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00031 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00013 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00284 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00030 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47310 * 90.00061 * 19 17 15 21 21 H 1.48500 * 109.47314 * 210.00649 * 19 17 15 22 22 H 1.48507 * 109.47037 * 330.00238 * 19 17 15 23 23 H 1.09007 * 109.46684 * 300.00480 * 1 2 3 24 24 H 1.09003 * 109.46822 * 59.99935 * 1 2 3 25 25 H 1.08991 * 109.47549 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.78544 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 269.71593 * 6 5 4 28 28 H 1.09000 * 109.47318 * 29.71191 * 6 5 4 29 29 H 1.09000 * 109.47161 * 149.71821 * 6 5 4 30 30 H 1.08008 * 119.46076 * 180.27992 * 7 5 4 31 31 H 1.08995 * 109.46629 * 299.99884 * 13 12 10 32 32 H 1.08995 * 109.46694 * 60.00137 * 13 12 10 33 33 H 1.09003 * 109.47307 * 299.99981 * 14 13 12 34 34 H 1.09003 * 109.47614 * 59.99750 * 14 13 12 35 35 H 0.97003 * 120.00628 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2970 2.3844 0.0058 5 6 1.9696 3.5926 0.0008 6 6 1.2020 4.8895 0.0019 7 6 3.3576 3.6011 0.0009 8 7 4.0424 2.4802 0.0005 9 6 3.4415 1.2949 -0.0004 10 6 4.2530 0.0607 -0.0014 11 8 3.7077 -1.0247 -0.0018 12 8 5.5980 0.1389 -0.0018 13 6 6.3313 -1.1144 -0.0034 14 6 7.8338 -0.8261 -0.0030 15 6 8.5948 -2.1269 -0.0052 16 1 8.0602 -3.0652 -0.0063 17 6 9.9736 -2.1190 -0.0048 18 7 10.6377 -3.2541 -0.0062 19 14 10.8983 -0.4959 -0.0022 20 1 11.1429 -0.0678 1.3985 21 1 12.1970 -0.6649 -0.7023 22 1 10.0899 0.5355 -0.7010 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 0.2175 2.3529 0.0108 27 1 1.0169 5.2030 -1.0255 28 1 0.2510 4.7485 0.5155 29 1 1.7828 5.6551 0.5163 30 1 3.8831 4.5447 0.0016 31 1 6.0716 -1.6882 0.8862 32 1 6.0709 -1.6865 -0.8938 33 1 8.0939 -0.2520 -0.8923 34 1 8.0940 -0.2541 0.8876 35 1 11.6077 -3.2485 -0.0056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753534607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:21 Heat of formation + Delta-G solvation = -115.428090 kcal Electronic energy + Delta-G solvation = -19308.069637 eV Core-core repulsion = 16077.839004 eV Total energy + Delta-G solvation = -3230.230633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.17554 -40.88840 -39.39617 -37.66267 -35.42108 -34.84508 -32.79355 -32.13891 -29.28607 -28.44529 -27.09525 -24.83589 -23.81560 -22.71837 -22.22143 -19.60296 -18.95445 -18.67134 -18.25841 -17.69971 -17.46166 -16.86936 -16.36132 -15.96517 -15.37690 -15.13316 -14.85879 -14.82938 -14.62137 -14.31317 -13.64859 -13.63331 -13.26641 -13.15002 -12.99630 -12.53992 -12.48925 -12.45975 -12.40606 -11.82309 -11.69164 -11.54828 -11.45845 -10.82383 -10.75389 -10.58730 -9.62934 -8.35750 -6.43886 -0.59870 0.14569 1.32632 1.37071 1.38708 1.52579 1.57133 2.06839 2.34007 2.63175 2.98653 3.13752 3.45169 3.61980 3.82908 4.00176 4.12876 4.13553 4.17736 4.21586 4.33740 4.54981 4.59629 4.71565 4.75829 4.87652 5.00887 5.13112 5.16020 5.25748 5.42556 5.44059 5.49593 6.10706 6.14529 6.51088 6.61155 6.85640 7.21101 8.80371 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.004082 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.806236 B = 6858.124995 C = 7788.879064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.311 6.311 3 C 0.145 3.855 4 C -0.173 4.173 5 C -0.044 4.044 6 C -0.114 4.114 7 C 0.052 3.948 8 N -0.427 5.427 9 C 0.002 3.998 10 C 0.509 3.491 11 O -0.519 6.519 12 O -0.347 6.347 13 C 0.092 3.908 14 C -0.001 4.001 15 C -0.543 4.543 16 H 0.037 0.963 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.954 3.046 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.249 1.249 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.189 0.811 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.197 0.803 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.775 20.867 0.000 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.222 6.222 3 C 0.095 3.905 4 C -0.199 4.199 5 C -0.047 4.047 6 C -0.170 4.170 7 C -0.112 4.112 8 N -0.138 5.138 9 C -0.131 4.131 10 C 0.353 3.647 11 O -0.408 6.408 12 O -0.263 6.263 13 C 0.018 3.982 14 C -0.038 4.038 15 C -0.580 4.580 16 H 0.055 0.945 17 C -0.184 4.184 18 N -0.582 5.582 19 Si 0.776 3.224 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.172 1.172 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.131 0.869 26 H 0.206 0.794 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.742 20.137 0.000 31.901 hybrid contribution -0.134 -0.524 0.008 0.541 sum -24.875 19.613 0.008 31.677 Atomic orbital electron populations 1.23607 0.75398 1.06180 1.03449 1.86377 1.24331 1.25359 1.86115 1.20119 0.90933 0.87281 0.92207 1.22025 1.02600 0.89491 1.05777 1.21612 0.94620 0.97501 0.90933 1.21000 1.00324 0.90959 1.04741 1.23402 0.91974 0.96203 0.99649 1.67627 1.40952 0.97777 1.07399 1.19274 0.88196 0.90668 1.14965 1.21199 0.81591 0.88964 0.72918 1.90823 1.73312 1.29867 1.46759 1.86632 1.18949 1.37609 1.83083 1.23013 0.91946 0.82116 1.01111 1.19440 0.89324 0.96714 0.98333 1.21089 0.92213 0.92180 1.52558 0.94507 1.25923 0.98321 1.00856 0.93322 1.70031 1.08426 1.28469 1.51309 0.85610 0.77885 0.79301 0.79638 1.18654 1.20119 1.17222 0.90067 0.90077 0.86881 0.79361 0.88301 0.88947 0.88834 0.78673 0.92389 0.92399 0.94844 0.94930 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.21 16 2 O -0.31 -8.42 8.56 -68.52 -0.59 -9.00 16 3 C 0.15 3.80 6.71 22.95 0.15 3.95 16 4 C -0.17 -2.61 8.80 22.55 0.20 -2.41 16 5 C -0.04 -0.57 5.90 -19.72 -0.12 -0.69 16 6 C -0.11 -0.36 10.03 71.24 0.71 0.35 16 7 C 0.05 1.00 10.85 84.90 0.92 1.92 16 8 N -0.43 -13.12 10.11 -184.67 -1.87 -14.99 16 9 C 0.00 0.07 6.76 41.90 0.28 0.35 16 10 C 0.51 21.69 7.94 70.32 0.56 22.24 16 11 O -0.52 -23.88 14.93 26.94 0.40 -23.48 16 12 O -0.35 -15.90 10.04 -56.39 -0.57 -16.46 16 13 C 0.09 4.47 5.41 71.98 0.39 4.86 16 14 C 0.00 -0.03 4.42 29.85 0.13 0.10 16 15 C -0.54 -33.21 9.66 25.60 0.25 -32.96 16 16 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 17 C 0.01 0.84 5.47 84.66 0.46 1.30 16 18 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 19 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 23 H 0.08 0.65 7.68 -2.38 -0.02 0.64 16 24 H 0.08 0.66 7.71 -2.39 -0.02 0.64 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.19 1.19 6.46 -2.91 -0.02 1.17 16 27 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.09 0.03 8.09 -2.39 -0.02 0.01 16 29 H 0.09 0.12 8.09 -2.39 -0.02 0.10 16 30 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.03 1.71 7.20 -2.39 -0.02 1.69 16 34 H 0.03 1.64 7.57 -2.39 -0.02 1.63 16 35 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -82.87 307.33 5.67 -77.21 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.04 Total: -0.97 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.06 Total: 0.23 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.57 Total: -75.05 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.75 Total: -48.95 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -82.87 5.67 -77.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753534607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.220 kcal (2) G-P(sol) polarization free energy of solvation -82.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds